Command line: [exonerate --exhaustive yes -m p2g --showtargetgff -q /export/home/u114420/treball/fastas/GP1a.x.fa -t GP1a.extraction.KV884777.1.fa]
Hostname: [sitdoc]

C4 Alignment:
------------
         Query: GP1a # Protein # Glutathione peroxidase 1a (GPx1a) # Zebrafish
        Target: KV884777.1:subseq(695402,100000) Monopterus albus unplaced genomic scaffold scaffold89.1, whole genome shotgun sequence:[revcomp]
         Model: protein2genome:local
     Raw score: 816
   Query range: 4 -> 187
  Target range: 51143 -> 49661

     5 : LysSerPheTyrAspIleThrAlaLysThrLeuThrGlyGluGluPheLysPheSerSer :    24
         |||!.!|||:!!!!:.!!|||||||||  !||||||||||||  !|||!!.|||||||||
         LysLysPheHisGluPheThrAlaLysLeuLeuThrGlyGluThrPheAsnPheSerSer
 51143 : AAGAAATTTCACGAGTTCACCGCCAAACTCTTAACGGGAGAAACGTTTAATTTTTCCTCC : 51086

    25 : LeuGlnGlyLysValValLeuIleGluAsnValAlaSerLeuUnkGlyThrThrSerArg :    44
         ||||||||||||||||||||||||||||||||||||||||||   |||||||||  !|||
         LeuGlnGlyLysValValLeuIleGluAsnValAlaSerLeu***GlyThrThrValArg
 51085 : CTGCAGGGCAAAGTTGTCCTCATTGAGAATGTGGCGTCTCTTTGAGGTACGACCGTCAGG : 51026

    45 : AspTyrThrGlnMetAsnGluLeuHisGluArgPheAlaGluLysGlyLeuValValLeu :    64
         |||||||||||||||||||||||||||||||||!:!|||...||||||||||||:!!|||
         AspTyrThrGlnMetAsnGluLeuHisGluArgTyrAlaSerLysGlyLeuValIleLeu
 51025 : GATTACACCCAGATGAACGAGCTCCACGAGCGGTACGCCAGCAAGGGGCTCGTAATCCTG : 50966

    65 : GlyValProCysAsnGlnPheGlyTyrGln  >>>> Target Intron 1 >>>>  G :    75
         ||||||||||||||||||||||||:!!|||            933 bp           |
         GlyValProCysAsnGlnPheGlyHisGln++                         ++G
 50965 : GGAGTGCCCTGCAACCAGTTCGGCCATCAGgt.........................agG : 50000

    76 : luAsnCysThrAsnGluGluIleLeuLeuSerLeuLysTyrValArgProGlyAsnGlyT :    95
         ||||||||! !||||||||||||||||||||||||||||||||||||||||||||||||!
         luAsnCysLysAsnGluGluIleLeuLeuSerLeuLysTyrValArgProGlyAsnGlyP
 49999 : AGAACTGCAAGAATGAAGAAATTCTTCTGTCTCTCAAGTACGTCCGTCCTGGAAATGGCT : 49940

    96 : yrGluProLysPheGlnLeuLeuGluLysValAspValAsnGlyLysAsnAlaHisProL :   115
         :!|||||||||||||||||||||||||||||||||||||||||||||:!!||||||||||
         heGluProLysPheGlnLeuLeuGluLysValAspValAsnGlyLysAspAlaHisProL
 49939 : TTGAGCCCAAGTTTCAGCTCCTGGAGAAGGTAGATGTGAATGGGAAGGATGCCCATCCCT : 49880

   116 : euPheThrPheLeuLysGluLysLeuProPheProSerAspGluProMetProPheMetS :   135
         |||||..!|||||||||||||||||||||! !|||||||||||||||.!. !!.!.|||!
         euPheValPheLeuLysGluLysLeuProSerProSerAspGluProPheAlaLeuMetT
 49879 : TGTTTGTGTTCCTGAAAGAGAAGCTCCCGTCCCCCAGTGACGAGCCATTCGCCCTGATGA : 49820

   136 : erAspProLysPheIleIleTrpSerProValCysArgAsnAspIleAlaTrpAsnPheG :   155
         !!||||||||||||||||||||||||||||||||||||||||||:!::!!||||||||||
         hrAspProLysPheIleIleTrpSerProValCysArgAsnAspValSerTrpAsnPheG
 49819 : CTGACCCGAAGTTTATCATCTGGAGCCCGGTCTGCAGGAATGACGTGTCCTGGAACTTTG : 49760

   156 : luLysPheLeuIleGlySerAspGlyValProPheLysArgTyrSerArgArgPheLeuT :   175
         ||||||||||||||||| !!||||||! !|||||||||||||||||||||||||||||||
         luLysPheLeuIleGlyProAspGlyGluProPheLysArgTyrSerArgArgPheLeuT
 49759 : AGAAGTTCCTCATTGGGCCTGATGGAGAGCCGTTCAAGCGTTACAGCAGGAGGTTCCTCA : 49700

   176 : hrSerGlyIleAspGlyAspIleLysLysLeuLeuSer :   187
         |||||! !:!!!!:||||||||||||||||||||||||
         hrSerAspLeuGluGlyAspIleLysLysLeuLeuSer
 49699 : CCAGCGACCTTGAGGGAGACATCAAGAAGCTCCTCAGC : 49662

vulgar: GP1a 4 187 . KV884777.1:subseq(695402,100000) 51143 49661 - 816 M 70 210 5 0 2 I 0 929 3 0 2 M 113 339
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2017-11-22
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
KV884777.1:subseq(695402,100000)	exonerate:protein2genome:local	gene	49662	51143	816	-	.	gene_id 1 ; sequence GP1a ; gene_orientation +
KV884777.1:subseq(695402,100000)	exonerate:protein2genome:local	cds	50934	51143	.	-	.	
KV884777.1:subseq(695402,100000)	exonerate:protein2genome:local	exon	50934	51143	.	-	.	insertions 0 ; deletions 0
KV884777.1:subseq(695402,100000)	exonerate:protein2genome:local	splice5	50932	50933	.	-	.	intron_id 1 ; splice_site "GT"
KV884777.1:subseq(695402,100000)	exonerate:protein2genome:local	intron	50001	50933	.	-	.	intron_id 1
KV884777.1:subseq(695402,100000)	exonerate:protein2genome:local	splice3	50001	50002	.	-	.	intron_id 0 ; splice_site "AG"
KV884777.1:subseq(695402,100000)	exonerate:protein2genome:local	cds	49662	50000	.	-	.	
KV884777.1:subseq(695402,100000)	exonerate:protein2genome:local	exon	49662	50000	.	-	.	insertions 0 ; deletions 0
KV884777.1:subseq(695402,100000)	exonerate:protein2genome:local	similarity	49662	51143	816	-	.	alignment_id 1 ; Query GP1a ; Align 51144 5 210 ; Align 50001 75 339
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis