Command line: [exonerate -m p2g --showtargetgff -q DIO1.x.fa -t DIO1.extraction.KV884771.1.fa]
Hostname: [sitdoc]

C4 Alignment:
------------
         Query: DIO1 # Protein # Iodothyronine deiodinase 1 (DIO1) # Zebrafish
        Target: KV884771.1:subseq(62576,100000) Monopterus albus unplaced genomic scaffold scaffold83.1, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 718
   Query range: 0 -> 226
  Target range: 49999 -> 51307

     1 : LeuArgLysLeuPheValTyrIleSerAlaValLeuMetValCysAlaAlaIleLeuArg :    20
         |||!:!||||||.!.:!!! !:!:|||.!!|||! !!  |||! !  !!.!|||  !! !
         LeuGlnLysLeuMetLeuCysLeuSerThrValCysAsnValPheTyrValIleAlaLeu
 50000 : TTGCAAAAACTTATGCTCTGTTTGTCGACAGTATGCAATGTCTTCTACGTTATAGCACTC : 50057

    21 : MetSerMetLeuLysLeuLeuSerPheIleSerProGlyArgMetArgLysIleHisMet :    40
         !    !! !:!!!:!:!!:!!  !||||||||||||.!!! !!  !:!|||  !  !!::
         AsnLeuThrValArgIleMetHisPheIleSerProSerLeuThrLysLysHisIleIle
 50058 : AATCTCACGGTCAGGATTATGCATTTCATTTCACCAAGCCTCACCAAGAAGCACATCAtc : 50117

    41 : LysMetGlyGluArgThrThrMetThrGlnAsnProLysPheArgTyrGluAspTrpGly :    60
         :::|||...|||:::|||||||||||||||||||||||||||!:!|||||||||||||||
         ArgMetAsnGluLysThrThrMetThrGlnAsnProLysPheLysTyrGluAspTrpGly
 50118 : agaatgaatgaaaagaCAACTATGACCCAGAATCCCAAATTTAAGTATGAAGATTGGGGT : 50177

    61 : ProAlaPhePheSerLeuAlaPheIleLysThrLeuPhePheValAsnTrpCysSerLeu :    80
         |||.!!|||  !|||!!!  !|||:!!|||.!!  !! !!::  !!  |||   ||||||
         ProThrPheAsnSerPheAsnPheValLysAlaAlaSerTrpHisMetTrpLeuSerLeu
 50178 : CCGACGTTTAACTCCTTTAATTTCGTCAAAGCCGCCTCCTGGCACATGTGGCTGTCTCTC : 50237

    81 : GlyLeuGluAlaPheGluGlyHisSerAlaProAspSerAlaLeuIleThrLeuAspArg :   100
         |||! !|||||||||  !! ! ! ..!|||||||||||| !!:!!:!!|||:!!||| !!
         GlyGlnGluAlaPheLeuGluLysGluAlaProAspSerProValValThrMetAspGly
 50238 : GGACAAGAGGCTTTTCTGGAAAAAGAAGCTCCGGACTCACCTGTGGTCACCATGGACGGA : 50297

   101 : GlnLysThrSerValHisArgPheLeuLys{G}  >>>> Target Intron 1 >>>> :   111
         :!!|||||||||:!!  !!:!!:!|||!:!{!}            91 bp          
         LysLysThrSerIlePheGlnTyrLeuArg{A}++                         
 50298 : AAGAAAACGAGTATCTTCCAGTACTTGAGA{G}gt......................... : 50333

   112 :   {ly}AsnArgProLeuValLeuSerPheGlySerCysThrUnkProProPheLeuTyr :   129
           { !}||||||||||||||||||||||||||||||||||||   |||||||||:!!|||
         ++{sp}AsnArgProLeuValLeuSerPheGlySerCysThr***ProProPheMetTyr
 50334 : ag{AC}AACAGGCCGCTGGTGTTGAGTTTTGGAAGCTGCACCTGACCCCCGTTTATGTAT : 50475

   130 : LysLeuAspGluPheLysGlnLeuValLysAspPheSerAsnValAlaAspPheLeuIle :   149
         !:!|||!!:||||||||||||||||||||||||||||||:!!|||||||||||||||:!:
         ArgLeuGluGluPheLysGlnLeuValLysAspPheSerAspValAlaAspPheLeuVal
 50476 : AGACTTGAGGAGTTCAAACAACTCGTCAAGGACTTCAGCGATGTGGCGGACTTTCTTGTG : 50535

   150 : ValTyrLeuAlaGluAlaHisAlaThr{A}  >>>> Target Intron 2 >>>>  { :   159
         ||||||:!!||||||||||||:!!|||{|}            539 bp           {
         ValTyrIleAlaGluAlaHisSerThr{A}++                         ++{
 50536 : GTTTACATCGCCGAGGCACATTCAACA{G}gt.........................ag{ : 51105

   160 : sp}AlaTrpAlaPheLysAsnAsnValAspIleSerValHisLysAsnLeuGluGluArg :   178
         ||}!.!|||||||||!!.||||||  !||||||!.!  !|||:::!:!||||||!!:|||
         sp}GlyTrpAlaPheAsnAsnAsnTyrAspIleLysHisHisArgSerLeuGluAspArg
 51106 : AT}GGTTGGGCCTTTAACAACAACTATGACATCAAGCACCACCGTAGCCTGGAGGACAGG : 51161

   179 : LeuAlaAlaAlaArgThrLeuLeuLysGluAspProProCysProValValValAspGlu :   198
         |||:!!|||||||||! !|||:!!:!!:!!!!:|||! !|||||||||||||||||||||
         LeuSerAlaAlaArgIleLeuValGlnLysGluProLeuCysProValValValAspGlu
 51162 : CTGTCCGCAGCACGGATCCTGGTTCAGAAGGAGCCCCTGTGTCCGGTGGTTGTGGATGAA : 51221

   199 : MetAsnAsnIleThrAlaSerLysTyrGlyAlaLeuProGluArgLeuTyrValIleGln :   218
         !!:|||:!!:!!||||||! !|||||||||||||||||||||||||||||||||:!:|||
         IleAsnAspValThrAlaIleLysTyrGlyAlaLeuProGluArgLeuTyrValLeuGln
 51222 : ATAAATGATGTCACTGCCATAAAGTATGGTGCTCTACCTGAAAGGCTTTATGTGCTGCAG : 51281

   219 : SerGlyLysValIleTyrGlnVal :   226
         :!!|||||||||:!:|||:!!|||
         AlaGlyLysValValTyrLysVal
 51282 : GCTGGGAAAGTCGTGTACAAGGTG : 51307

vulgar: DIO1 0 226 . KV884771.1:subseq(62576,100000) 49999 51307 + 718 M 110 330 S 0 1 5 0 2 I 0 87 3 0 2 S 1 2 M 47 141 S 0 1 5 0 2 I 0 535 3 0 2 S 1 2 M 67 201
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2017-11-23
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
KV884771.1:subseq(62576,100000)	exonerate:protein2genome:local	gene	50000	51307	718	+	.	gene_id 1 ; sequence DIO1 ; gene_orientation +
KV884771.1:subseq(62576,100000)	exonerate:protein2genome:local	cds	50000	50330	.	+	.	
KV884771.1:subseq(62576,100000)	exonerate:protein2genome:local	exon	50000	50330	.	+	.	insertions 0 ; deletions 0
KV884771.1:subseq(62576,100000)	exonerate:protein2genome:local	splice5	50331	50332	.	+	.	intron_id 1 ; splice_site "GT"
KV884771.1:subseq(62576,100000)	exonerate:protein2genome:local	intron	50331	50421	.	+	.	intron_id 1
KV884771.1:subseq(62576,100000)	exonerate:protein2genome:local	splice3	50420	50421	.	+	.	intron_id 0 ; splice_site "AG"
KV884771.1:subseq(62576,100000)	exonerate:protein2genome:local	cds	50422	50565	.	+	.	
KV884771.1:subseq(62576,100000)	exonerate:protein2genome:local	exon	50422	50565	.	+	.	insertions 0 ; deletions 0
KV884771.1:subseq(62576,100000)	exonerate:protein2genome:local	splice5	50566	50567	.	+	.	intron_id 2 ; splice_site "GT"
KV884771.1:subseq(62576,100000)	exonerate:protein2genome:local	intron	50566	51104	.	+	.	intron_id 2
KV884771.1:subseq(62576,100000)	exonerate:protein2genome:local	splice3	51103	51104	.	+	.	intron_id 1 ; splice_site "AG"
KV884771.1:subseq(62576,100000)	exonerate:protein2genome:local	cds	51105	51307	.	+	.	
KV884771.1:subseq(62576,100000)	exonerate:protein2genome:local	exon	51105	51307	.	+	.	insertions 0 ; deletions 0
KV884771.1:subseq(62576,100000)	exonerate:protein2genome:local	similarity	50000	51307	718	+	.	alignment_id 1 ; Query DIO1 ; Align 50000 1 330 ; Align 50424 112 141 ; Align 51107 160 201
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis