TBLASTN 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.



Database: /cursos/20428/BI/genomes/2017/Ammotragus_lervia/genome.fa
           77,320 sequences; 2,650,836,958 total letters



Query= SPP00000281_2.0 # Protein # Thioredoxin reductase 3 (TXNRD3) # Cow

Length=565
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  NIVO01001699.1 Ammotragus lervia isolate NAZ scaffold1294_len48...    155   3e-37
  NIVO01039896.1 Ammotragus lervia isolate NAZ scaffold2252_len10...    119   8e-26
  NIVO01041852.1 Ammotragus lervia isolate NAZ scaffold19593_len8...  94.4    6e-18
  NIVO01019577.1 Ammotragus lervia isolate NAZ scaffold5500_len73...  75.5    1e-15
  NIVO01028081.1 Ammotragus lervia isolate NAZ scaffold158735_len...  68.9    3e-11
  NIVO01015737.1 Ammotragus lervia isolate NAZ scaffold12042_len1...  65.5    5e-09
  NIVO01020513.1 Ammotragus lervia isolate NAZ scaffold283491_len...  58.2    4e-08
  NIVO01018039.1 Ammotragus lervia isolate NAZ scaffold2881_len44...  62.8    4e-08
  NIVO01010479.1 Ammotragus lervia isolate NAZ scaffold1466_len24...  48.5    0.001
  NIVO01048552.1 Ammotragus lervia isolate NAZ scaffold99285_len6...  33.1    0.005
  NIVO01026070.1 Ammotragus lervia isolate NAZ scaffold20502_len1...  45.4    0.007
  NIVO01041139.1 Ammotragus lervia isolate NAZ scaffold5566_len10...  41.6    0.13 
  NIVO01040210.1 Ammotragus lervia isolate NAZ scaffold82080_len2...  38.1    0.93 
  NIVO01014600.1 Ammotragus lervia isolate NAZ scaffold3076_len15...  37.0    3.1  
  NIVO01027699.1 Ammotragus lervia isolate NAZ scaffold741_len267...  37.0    3.2  
  NIVO01071396.1 Ammotragus lervia isolate NAZ scaffold3435_len13...  35.8    7.3  


> NIVO01001699.1 Ammotragus lervia isolate NAZ scaffold1294_len4820224_cov71, 
whole genome shotgun sequence
Length=4805144

 Score =   155 bits (392),  Expect = 3e-37, Method: Compositional matrix adjust.
 Identities = 82/102 (80%), Positives = 84/102 (82%), Gaps = 7/102 (7%)
 Frame = +1

Query  221      AKFVIATGERPRYLGIPGDREYCITSDDLFSLPYCPGATLVVGASYVALECAGFLAGLGL  280
                A F +A G  PR     G    C  SDDLFSLPYCPG TLVVGASYVALECAGFLAGLGL
Sbjct  4548874  APFALAPGTVPR-----GSPSLC--SDDLFSLPYCPGTTLVVGASYVALECAGFLAGLGL  4549032

Query  281      EVTVMVRSVLLRGFDQEMAEKVGASMQQLGVRFLRKFVPVEV  322
                EVTVMVRSVLLRGFDQEMAEKVGA +QQLGVRFLRKFVPVEV
Sbjct  4549033  EVTVMVRSVLLRGFDQEMAEKVGACLQQLGVRFLRKFVPVEV  4549158


 Score =   123 bits (309),  Expect = 2e-27, Method: Compositional matrix adjust.
 Identities = 71/145 (49%), Positives = 77/145 (53%), Gaps = 56/145 (39%)
 Frame = +2

Query  157      SQQVRHSWATMTEAIQSHIGSLSWGHRLALREKAVTYVNSFGEFVEHHKVKATNEKG---  213
                S  VRHSWATMTEAIQSH+GSLSWG RLALRE AVTYVNS+GEFVEHHKVK +   G   
Sbjct  4547894  SPPVRHSWATMTEAIQSHVGSLSWGRRLALRENAVTYVNSYGEFVEHHKVKVSRAFGPIG  4548073

Query  214      --------------------------------------QEVLYTAAK-------------  222
                                                       EV +  +K             
Sbjct  4548074  CPPYLCLRPREPGLRGPC*GPRPVCERPGVRSVWY*RKSEVCFAFSKATNEKGQEALYTA  4548253

Query  223      --FVIATGERPRYLGIPGDREYCIT  245
                  FVIATG+RPRYLGIPGDREYCIT
Sbjct  4548254  AKFVIATGQRPRYLGIPGDREYCIT  4548328


 Score =   102 bits (253),  Expect = 3e-20, Method: Compositional matrix adjust.
 Identities = 49/56 (88%), Positives = 52/56 (93%), Gaps = 0/56 (0%)
 Frame = +3

Query  378      KTGKIPVNDEEQTSVSYVYAVGDVLEGKPQLTPVAVQAGKLLARRLFGGRSEKCDY  433
                +TGKIPVN EEQTSV YVYAVGDVLEGKPQLTPVAV+AGKLLARRLFGGRSEK  +
Sbjct  4557228  RTGKIPVNGEEQTSVPYVYAVGDVLEGKPQLTPVAVRAGKLLARRLFGGRSEKVSF  4557395


 Score = 96.3 bits (238),  Expect = 2e-18, Method: Compositional matrix adjust.
 Identities = 45/47 (96%), Positives = 45/47 (96%), Gaps = 0/47 (0%)
 Frame = +1

Query  498      NDRVIGFHVLGPNAGEITQGFAAAMKCGLTKQLLDDTIGIHPTCGEV  544
                 DRVIGFHVLGPNAGEITQGFAAAMKCGLTKQLLD TIGIHPTCGEV
Sbjct  4566472  KDRVIGFHVLGPNAGEITQGFAAAMKCGLTKQLLDATIGIHPTCGEV  4566612


 Score = 87.8 bits (216),  Expect = 7e-16, Method: Compositional matrix adjust.
 Identities = 40/40 (100%), Positives = 40/40 (100%), Gaps = 0/40 (0%)
 Frame = +3

Query  120      GLGGTCVNVGCIPKKLMHQAALLGQALTDSRKFGWEYSQQ  159
                GLGGTCVNVGCIPKKLMHQAALLGQALTDSRKFGWEYSQQ
Sbjct  4545639  GLGGTCVNVGCIPKKLMHQAALLGQALTDSRKFGWEYSQQ  4545758


 Score = 78.2 bits (191),  Expect = 6e-13, Method: Compositional matrix adjust.
 Identities = 35/38 (92%), Positives = 36/38 (95%), Gaps = 0/38 (0%)
 Frame = +3

Query  430      KCDYVNVPTVVFTPLEYGCCGYSEEKAGEVYQAENLNV  467
                +CDYVNVPTVVFTPLEYGCCGYSEEKAGEV QAENL V
Sbjct  4557996  QCDYVNVPTVVFTPLEYGCCGYSEEKAGEVCQAENLGV  4558109


 Score = 76.6 bits (187),  Expect = 2e-12, Method: Compositional matrix adjust.
 Identities = 36/44 (82%), Positives = 37/44 (84%), Gaps = 4/44 (9%)
 Frame = +1

Query  465      LNVYHTLFWPLEWTVAGRDNNTCYAKIICNKLDNDRVIGFHVLG  508
                L VYHTLFWPLEWTVA RDNNTCYAKIICNKLDN R    HV+G
Sbjct  4562728  LQVYHTLFWPLEWTVACRDNNTCYAKIICNKLDNVR----HVVG  4562847


 Score = 75.9 bits (185),  Expect = 3e-12, Method: Compositional matrix adjust.
 Identities = 33/42 (79%), Positives = 39/42 (93%), Gaps = 0/42 (0%)
 Frame = +2

Query  23       VDEGASVQEALSEITSQRTVPSVFVNRVHVGGCDHTFQAHQS  64
                +DEGASVQE LSE+T+QRTVPS+FVNRVHVGGCDHTFQ + +
Sbjct  4541588  LDEGASVQEVLSEMTNQRTVPSIFVNRVHVGGCDHTFQVNST  4541713


 Score = 66.2 bits (160),  Expect = 3e-09, Method: Compositional matrix adjust.
 Identities = 30/35 (86%), Positives = 34/35 (97%), Gaps = 0/35 (0%)
 Frame = +2

Query  319      PVEVQQLERGLPGRLKVVAKSTEGTETIEGIYNTV  353
                P +VQQLE+GLPGRLKVVAKSTEGTET+EG+YNTV
Sbjct  4549835  PCQVQQLEKGLPGRLKVVAKSTEGTETMEGVYNTV  4549939


 Score = 62.4 bits (150),  Expect = 5e-08, Method: Compositional matrix adjust.
 Identities = 28/30 (93%), Positives = 30/30 (100%), Gaps = 0/30 (0%)
 Frame = +3

Query  91       LSCAQEAAVLGRKVMVLDFVVPSPRGTAWG  120
                +SC+QEAAVLGRKVMVLDFVVPSPRGTAWG
Sbjct  4544658  VSCSQEAAVLGRKVMVLDFVVPSPRGTAWG  4544747


 Score = 52.8 bits (125),  Expect = 5e-05, Method: Compositional matrix adjust.
 Identities = 25/26 (96%), Positives = 26/26 (100%), Gaps = 0/26 (0%)
 Frame = +3

Query  353      VLLAIGRDSCTKKLGLEKIGVNVSEK  378
                VLLAIGRDSCTKKLGLEKIGVN+SEK
Sbjct  4556418  VLLAIGRDSCTKKLGLEKIGVNISEK  4556495


 Score = 50.1 bits (118),  Expect = 3e-04, Method: Compositional matrix adjust.
 Identities = 27/50 (54%), Positives = 35/50 (70%), Gaps = 3/50 (6%)
 Frame = +2

Query  519      AAAMKCGLTKQLLDDTIGIH---PTCGEVFTTLEITKASGLDITQKGCXG  565
                A+A + G  ++L    + +    P+ G+VFTTLEITKASGLDITQKGC G
Sbjct  4566665  ASAPRQGRARKLASAELRVSRCLPSPGQVFTTLEITKASGLDITQKGC*G  4566814


 Score = 47.8 bits (112),  Expect = 0.002, Method: Compositional matrix adjust.
 Identities = 23/25 (92%), Positives = 23/25 (92%), Gaps = 0/25 (0%)
 Frame = +1

Query  1        SLQVKELFSSLGVDCNILELDQVDE  25
                SLQVKELFSSLGVDCNILELDQ  E
Sbjct  4540624  SLQVKELFSSLGVDCNILELDQAGE  4540698


 Score = 40.0 bits (92),  Expect = 0.40, Method: Compositional matrix adjust.
 Identities = 35/36 (97%), Positives = 35/36 (97%), Gaps = 0/36 (0%)
 Frame = +3

Query  60       QAHQSGllqqllqqDPAYDYDLIVIgggsggLSCAQ  95
                QAHQSGLLQQLLQQD AYDYDLIVIGGGSGGLSCAQ
Sbjct  4544352  QAHQSGLLQQLLQQDLAYDYDLIVIGGGSGGLSCAQ  4544459


> NIVO01039896.1 Ammotragus lervia isolate NAZ scaffold2252_len1020358_cov73, 
whole genome shotgun sequence
Length=1021076

 Score =   119 bits (297),  Expect = 8e-26, Method: Compositional matrix adjust.
 Identities = 53/71 (75%), Positives = 65/71 (92%), Gaps = 0/71 (0%)
 Frame = -3

Query  253     PYCPGATLVVGASYVALECAGFLAGLGLEVTVMVRSVLLRGFDQEMAEKVGASMQQLGVR  312
               PYCPG TLVVGASYVALECAGFLAG+GL+VTVMVRS+LLRGFDQ+MA K+G  MQ+ G++
Sbjct  931350  PYCPGKTLVVGASYVALECAGFLAGIGLDVTVMVRSILLRGFDQDMANKIGEHMQEHGIK  931171

Query  313     FLRKFVPVEVQ  323
               F+R+FVP++V 
Sbjct  931170  FIREFVPIKVS  931138


 Score = 84.3 bits (207),  Expect = 9e-15, Method: Compositional matrix adjust.
 Identities = 36/46 (78%), Positives = 41/46 (89%), Gaps = 0/46 (0%)
 Frame = -3

Query  499     DRVIGFHVLGPNAGEITQGFAAAMKCGLTKQLLDDTIGIHPTCGEV  544
               +RV+GFH+LGPNAGE+TQGFAAA+KCGLTK  LD TIGIHP C EV
Sbjct  913677  ERVVGFHILGPNAGEVTQGFAAALKCGLTKDQLDSTIGIHPVCAEV  913540


 Score = 83.2 bits (204),  Expect = 2e-14, Method: Compositional matrix adjust.
 Identities = 36/55 (65%), Positives = 48/55 (87%), Gaps = 0/55 (0%)
 Frame = -3

Query  378     KTGKIPVNDEEQTSVSYVYAVGDVLEGKPQLTPVAVQAGKLLARRLFGGRSEKCD  432
               +TGKIPV +EEQT+V Y+YA+GD+LEGK +LTPVA+QAG+LLA+RL+GG + K  
Sbjct  927234  RTGKIPVTEEEQTNVPYIYAIGDILEGKLELTPVAIQAGRLLAQRLYGGSTVKVS  927070


 Score = 77.8 bits (190),  Expect = 1e-12, Method: Compositional matrix adjust.
 Identities = 33/53 (62%), Positives = 44/53 (83%), Gaps = 0/53 (0%)
 Frame = -1

Query  157     SQQVRHSWATMTEAIQSHIGSLSWGHRLALREKAVTYVNSFGEFVEHHKVKAT  209
               S+ V+H W  MTEA+Q+HIGSL+WG+R+ALREK VTY NS+GEFV  H++K +
Sbjct  933671  SRAVKHDWERMTEAVQNHIGSLNWGYRVALREKKVTYENSYGEFVGPHRIKVS  933513


 Score = 72.4 bits (176),  Expect = 4e-11, Method: Compositional matrix adjust.
 Identities = 32/39 (82%), Positives = 34/39 (87%), Gaps = 0/39 (0%)
 Frame = -2

Query  120     GLGGTCVNVGCIPKKLMHQAALLGQALTDSRKFGWEYSQ  158
               GLGGTCVNVGCIPKKLMHQAALLGQAL DSR +GW   +
Sbjct  942454  GLGGTCVNVGCIPKKLMHQAALLGQALRDSRNYGWNVEE  942338


 Score = 68.2 bits (165),  Expect = 9e-10, Method: Compositional matrix adjust.
 Identities = 28/38 (74%), Positives = 35/38 (92%), Gaps = 0/38 (0%)
 Frame = -3

Query  208     ATNEKGQEVLYTAAKFVIATGERPRYLGIPGDREYCIT  245
               ATN KG+E +Y+A +F+IATGERPRYLGIPGD+EYCI+
Sbjct  933132  ATNNKGKEKIYSAERFLIATGERPRYLGIPGDKEYCIS  933019


 Score = 60.1 bits (144),  Expect = 3e-07, Method: Compositional matrix adjust.
 Identities = 24/42 (57%), Positives = 29/42 (69%), Gaps = 2/42 (5%)
 Frame = -3

Query  467     VYHTLFWPLEWTVAGRDNNTCYAKIICNKLDNDRVIGFHVLG  508
               VYH+ FWPLEWT+  RDNN CYAK++CN  DN  V   H+  
Sbjct  917832  VYHSYFWPLEWTIPSRDNNKCYAKVVCNIKDN--VSAIHIYS  917713


 Score = 59.7 bits (143),  Expect = 4e-07, Method: Compositional matrix adjust.
 Identities = 29/46 (63%), Positives = 33/46 (72%), Gaps = 0/46 (0%)
 Frame = -3

Query  430     KCDYVNVPTVVFTPLEYGCCGYSEEKAGEVYQAENLNVYHTLFWPL  475
               +CDY NVPT VFTPLEYG CG SEEKA E +  EN+ V  TL + L
Sbjct  920325  QCDYENVPTTVFTPLEYGSCGLSEEKAVEKFGEENVEVSFTLHYLL  920188


 Score = 48.9 bits (115),  Expect = 8e-04, Method: Compositional matrix adjust.
 Identities = 23/32 (72%), Positives = 27/32 (84%), Gaps = 0/32 (0%)
 Frame = -1

Query  322     VQQLERGLPGRLKVVAKSTEGTETIEGIYNTV  353
               V+Q+E G PGRL+VVAKST G +TIEG YNTV
Sbjct  929468  VEQIEAGTPGRLRVVAKSTNGDQTIEGEYNTV  929373


 Score = 43.1 bits (100),  Expect = 0.036, Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 24/26 (92%), Gaps = 0/26 (0%)
 Frame = -2

Query  353     VLLAIGRDSCTKKLGLEKIGVNVSEK  378
               VLLAIGRD+CT+K+GLE +GV ++EK
Sbjct  928801  VLLAIGRDACTRKIGLENVGVKINEK  928724


 Score = 41.2 bits (95),  Expect = 0.14, Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 20/26 (77%), Gaps = 0/26 (0%)
 Frame = -2

Query  95      QEAAVLGRKVMVLDFVVPSPRGTAWG  120
               QEAA   +KVMVLDFV P+P GT WG
Sbjct  944929  QEAAKYDKKVMVLDFVTPTPLGTRWG  944852


> NIVO01041852.1 Ammotragus lervia isolate NAZ scaffold19593_len861446_cov94, 
whole genome shotgun sequence
Length=853088

 Score = 94.4 bits (233),  Expect = 6e-18, Method: Compositional matrix adjust.
 Identities = 49/117 (42%), Positives = 71/117 (61%), Gaps = 4/117 (3%)
 Frame = -2

Query  432    DYVNVPTVVFTPLEYGCCGYSEEKAGEVYQAENLNVYHTLFWPLEWTVAGRDNNTCYAKI  491
              DY  +PT VF+    G  G SEE+A E  +   + V+ + F P++ T+      T + K+
Sbjct  95995  DYNMIPTAVFSLPNIGTVGLSEEQALE--EGHTVQVFESSFRPMKLTLTECQERT-FMKL  95825

Query  492    ICNKLDNDRVIGFHVLGPNAGEITQGFAAAMKCGLTKQLLDDTIGIHPTCGEVFTTL  548
              + +  + D+V+G H++GP AGEI QG A AMK G TKQ  D+TIG+HPT  E F T+
Sbjct  95824  VVDA-ETDKVLGCHMVGPEAGEIVQGLAIAMKAGATKQHFDETIGVHPTAAEEFVTM  95657


> NIVO01019577.1 Ammotragus lervia isolate NAZ scaffold5500_len738321_cov71, 
whole genome shotgun sequence
Length=736096

 Score = 75.5 bits (184),  Expect(2) = 1e-15, Method: Compositional matrix adjust.
 Identities = 35/54 (65%), Positives = 40/54 (74%), Gaps = 1/54 (2%)
 Frame = +2

Query  111     VPSPRGTAWGLGGTCVNVGCIPKKLMHQAALLGQALTDSRKFGWEYSQQVRHSW  164
               +P P GT WGLGGTCVNVGCIPKKLMHQAALLG  + D+  +GW  + Q  H W
Sbjct  239684  LPLPPGTRWGLGGTCVNVGCIPKKLMHQAALLGGMIRDAPHYGWRVA-QAPHDW  239842


 Score = 32.7 bits (73),  Expect(2) = 1e-15, Method: Compositional matrix adjust.
 Identities = 15/20 (75%), Positives = 17/20 (85%), Gaps = 0/20 (0%)
 Frame = +1

Query  97      AAVLGRKVMVLDFVVPSPRG  116
               AA LG+KV VLD+V PSPRG
Sbjct  239524  AAQLGKKVAVLDYVEPSPRG  239583


 Score = 57.8 bits (138),  Expect = 1e-06, Method: Compositional matrix adjust.
 Identities = 30/81 (37%), Positives = 39/81 (48%), Gaps = 23/81 (28%)
 Frame = +3

Query  466     NVYHTLFWPLEWTVAGRDNNTCYAKI-----------------------ICNKLDNDRVI  502
                VYH  + PLE+TV  RD + CY K+                       +C +     V+
Sbjct  259398  QVYHAFYKPLEFTVPQRDASQCYVKVSVLWAWPGRTGPCHPR*PHAFQMVCLREPPQLVL  259577

Query  503     GFHVLGPNAGEITQGFAAAMK  523
               G H LGPNAGE+TQGFA  +K
Sbjct  259578  GLHFLGPNAGEVTQGFALGIK  259640


 Score = 54.3 bits (129),  Expect = 1e-05, Method: Compositional matrix adjust.
 Identities = 27/45 (60%), Positives = 32/45 (71%), Gaps = 0/45 (0%)
 Frame = +1

Query  252     LPYCPGATLVVGASYVALECAGFLAGLGLEVTVMVRSVLLRGFDQ  296
               +P  P   L+   + VALECAGFL GLGL+ TVM+RSV LR FDQ
Sbjct  249079  VPTSPSLALLSCLADVALECAGFLTGLGLDTTVMIRSVPLRAFDQ  249213


 Score = 48.5 bits (114),  Expect = 8e-04, Method: Compositional matrix adjust.
 Identities = 25/52 (48%), Positives = 33/52 (63%), Gaps = 0/52 (0%)
 Frame = +2

Query  358     GRDSCTKKLGLEKIGVNVSEKTGKIPVNDEEQTSVSYVYAVGDVLEGKPQLT  409
               GR   T  L LEK GV  +  TGKI V+ +E TS+ ++YA+GDV E +P  T
Sbjct  256457  GRVPETASLNLEKAGVRTNPVTGKIFVDAQEATSIPHIYAIGDVAEVRPAPT  256612


 Score = 46.6 bits (109),  Expect = 0.004, Method: Compositional matrix adjust.
 Identities = 23/45 (51%), Positives = 28/45 (62%), Gaps = 0/45 (0%)
 Frame = +2

Query  521     AMKCGLTKQLLDDTIGIHPTCGEVFTTLEITKASGLDITQKGCXG  565
               A +CG + Q +  T+GIHPTC E    L I+K SGLD T  GC G
Sbjct  260273  ACRCGASFQQVIRTVGIHPTCAEEVAKLRISKRSGLDPTVTGC*G  260407


 Score = 42.4 bits (98),  Expect = 0.074, Method: Compositional matrix adjust.
 Identities = 18/35 (51%), Positives = 26/35 (74%), Gaps = 0/35 (0%)
 Frame = +1

Query  402     LEGKPQLTPVAVQAGKLLARRLFGGRSEKCDYVNV  436
                +G+P+LTP A+ AG+LLA+RL G  S+  DY +V
Sbjct  257614  FQGRPELTPTAIMAGRLLAQRLSGRTSDLMDYSSV  257718


 Score = 40.4 bits (93),  Expect = 0.29, Method: Compositional matrix adjust.
 Identities = 19/34 (56%), Positives = 23/34 (68%), Gaps = 0/34 (0%)
 Frame = +2

Query  434     VNVPTVVFTPLEYGCCGYSEEKAGEVYQAENLNV  467
               + VPT VFTPLEYGC G SEE A   +  E++ V
Sbjct  258089  LQVPTTVFTPLEYGCVGLSEEAAVARHGEEHVEV  258190


 Score = 37.4 bits (85),  Expect = 2.7, Method: Compositional matrix adjust.
 Identities = 13/25 (52%), Positives = 22/25 (88%), Gaps = 0/25 (0%)
 Frame = +2

Query  165     ATMTEAIQSHIGSLSWGHRLALREK  189
               ATM +A+Q+H+ SL+WGHR+ L+++
Sbjct  240191  ATMADAVQNHVKSLNWGHRVQLQDR  240265


> NIVO01028081.1 Ammotragus lervia isolate NAZ scaffold158735_len630_cov85, 
whole genome shotgun sequence
Length=519

 Score = 68.9 bits (167),  Expect = 3e-11, Method: Compositional matrix adjust.
 Identities = 48/154 (31%), Positives = 78/154 (51%), Gaps = 12/154 (8%)
 Frame = +2

Query  121  LGGTCVNVGCIPKKLMHQAALLGQALTDSRKFGWEYSQQVRHSWATMTEAIQSHIGSLSW  180
            LGGTCVNVGC+PKK+M   A+  + + D   +G++ S + + +W  + E   +++  L+ 
Sbjct  77   LGGTCVNVGCVPKKVMWNTAVHSEFMHDHVDYGFQ-SCESKFNWRIIKEKRDAYVSRLNT  253

Query  181  GHRLALREKAVTYVNSFGEFV--EHHKVKATNEKGQEVLYTAAKFVIATG---ERPRYLG  235
             ++  L +  +  ++    F       V+   +K     YTA   +IATG     P+   
Sbjct  254  IYQNNLTKSHIDIIHGHAAFTCDPQPTVEVNGKK-----YTAPHILIATGGVPSVPQESQ  418

Query  236  IPGDREYCITSDDLFSLPYCPGATLVVGASYVAL  269
            IPG     ITSD  F L   P  ++ VGA Y+A+
Sbjct  419  IPGA-SLGITSDGFFQLEELPRRSVTVGAGYIAV  517


> NIVO01015737.1 Ammotragus lervia isolate NAZ scaffold12042_len120434_cov41, 
whole genome shotgun sequence
Length=92000

 Score = 65.5 bits (158),  Expect = 5e-09, Method: Compositional matrix adjust.
 Identities = 76/297 (26%), Positives = 128/297 (43%), Gaps = 23/297 (8%)
 Frame = +2

Query  263  GASYVALECAGFLAGLGLEVTVM-VRSVLLRGFDQEMAEKVGASMQQLGVRFLRKFVPVE  321
            GA  + +E A   + L  +VTV+  R  +L   D+E+ E       QL  R ++     +
Sbjct  2    GAGVIGIEYATIFSALDTQVTVVEPRETMLEFIDKEIVEDF---TYQLRDRNMKLIFGQK  172

Query  322  VQQLERGLPGRLKVVAKSTEGTETIEGIYNTVLLAIGRDSCTKKLGLEKIGVNVSEKTGK  381
             +++ER   G+  V   +    +       TVL A GR   T  L L   G+    + G+
Sbjct  173  AEKVERDETGKCLVTLGNGRVLKA-----ETVLFAAGRVGATDTLNLSACGLEADSR-GR  334

Query  382  IPVNDEE-QTSVSYVYAVGDVLEGKPQLTPVAVQAGKLLARRLFGGRSEKCDYVNVPTVV  440
            + V+ E  QTSV  +YA GD++ G P L   +++ G++ AR   G  + +      P  +
Sbjct  335  LKVDPETFQTSVPNIYAAGDII-GFPSLASTSMEQGRIAARHAVGAPAGEPPQF-FPYGI  508

Query  441  FTPLEYGCCGYSEEKAGEVYQAENLNVYHTLFWPLEWTVAGRDNNTCYAKIICNKLDNDR  500
            +   E   CG +EE+  E        + H         + G D+     K+I + L   R
Sbjct  509  YAVPEISTCGLTEEEVIERGIPYECGIAH-FRETSRGHIMGLDSGLL--KMIFS-LKTRR  676

Query  501  VIGFHVLGPNAGEITQGFAAAMKCGLTKQLLDDTIGIHPTCGEVFTTLEITKASGLD  557
            ++G H++G  A E+     A +    T +   +    +PT  E +      K +GLD
Sbjct  677  LLGVHIVGEGATELVHIGQAVLNLKGTVEYFVENTFNYPTLAEAY------KIAGLD  829


> NIVO01020513.1 Ammotragus lervia isolate NAZ scaffold283491_len299_cov19_single, 
whole genome shotgun sequence
Length=299

 Score = 58.2 bits (139),  Expect = 4e-08, Method: Compositional matrix adjust.
 Identities = 39/101 (39%), Positives = 50/101 (50%), Gaps = 2/101 (2%)
 Frame = -1

Query  356  AIGRDSCTKKLGLEKIGVNVSEKTGKIPVNDEEQTSVSYVYAVGDVLEGKPQLTPVAVQA  415
            AIGR   T  LGLE  GV V E  G I V+   +TS   ++AVGDV   + QLTPVA+  
Sbjct  299  AIGRVPNTASLGLEAAGVAVDE-MGAIKVDGYSRTSRENIWAVGDVTN-RVQLTPVAIHE  126

Query  416  GKLLARRLFGGRSEKCDYVNVPTVVFTPLEYGCCGYSEEKA  456
                          K D+  + T VF+  E G  G +E+ A
Sbjct  125  AMCFLETALKNNPTKPDHALIATAVFSQPEIGTVGLTEQDA  3


> NIVO01018039.1 Ammotragus lervia isolate NAZ scaffold2881_len443227_cov46, 
whole genome shotgun sequence
Length=443000

 Score = 62.8 bits (151),  Expect = 4e-08, Method: Compositional matrix adjust.
 Identities = 75/291 (26%), Positives = 126/291 (43%), Gaps = 23/291 (8%)
 Frame = +1

Query  269     LECAGFLAGLGLEVTVM-VRSVLLRGFDQEMAEKVGASMQQLGVRFLRKFVPVEVQQLER  327
               +E A   + L  +VTV+  R  +L   D+E+ E       QL  R ++     + +++ER
Sbjct  305794  IEYATIFSALDTQVTVVEPRETMLEFIDKEIVEDF---TYQLRDRNMKLIFGQKAEKVER  305964

Query  328     GLPGRLKVVAKSTEGTETIEGIYNTVLLAIGRDSCTKKLGLEKIGVNVSEKTGKIPVNDE  387
                  G+  V   +    +T      TVL A GR   T  L L   G+    + G++ V+ E
Sbjct  305965  DENGKCLVSLGNGRVLKT-----ETVLFAAGRVGATDTLNLSACGLEADSR-GRLKVDPE  306126

Query  388     E-QTSVSYVYAVGDVLEGKPQLTPVAVQAGKLLARRLFGGRSEKCDYVNVPTVVFTPLEY  446
                 QTSV  +YA GD++ G P L   +++ G++ AR   G  + +      P  ++   E 
Sbjct  306127  TFQTSVPNIYAAGDII-GFPSLASTSMEQGRIAARHAVGAPAGEPPQF-FPYGIYAVPEI  306300

Query  447     GCCGYSEEKAGEVYQAENLNVYHTLFWPLEWTVAGRDNNTCYAKIICNKLDNDRVIGFHV  506
                 CG +EE+  E        + H         + G D+     K+I + L   R++G H+
Sbjct  306301  STCGLTEEEVIERGIPYECGIAH-FRETSRGHIMGLDSGLL--KMIFS-LKTRRLLGVHI  306468

Query  507     LGPNAGEITQGFAAAMKCGLTKQLLDDTIGIHPTCGEVFTTLEITKASGLD  557
               +G  A E+     A +    T +   +    +PT  E +      K +GLD
Sbjct  306469  VGEGATELVHIGQAVLNLKGTVEYFVENTFNYPTLAEAY------KIAGLD  306603


> NIVO01010479.1 Ammotragus lervia isolate NAZ scaffold1466_len2495677_cov73, 
whole genome shotgun sequence
Length=2495322

 Score = 48.5 bits (114),  Expect = 0.001, Method: Compositional matrix adjust.
 Identities = 23/49 (47%), Positives = 30/49 (61%), Gaps = 0/49 (0%)
 Frame = +1

Query  500     RVIGFHVLGPNAGEITQGFAAAMKCGLTKQLLDDTIGIHPTCGEVFTTL  548
               +V+G H+ G    E+ QGFA A+K G TK   D+T+ IHPT  E   TL
Sbjct  281002  QVVGIHMQGIGCDEMLQGFAVAVKMGATKSDFDNTVAIHPTSSEELVTL  281148


 Score = 40.4 bits (93),  Expect = 0.26, Method: Compositional matrix adjust.
 Identities = 22/46 (48%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
 Frame = +1

Query  411     VAVQAGKLLARRLFGGRSE-KCDYVNVPTVVFTPLEYGCCGYSEEK  455
               VA+ AG+ LA RLF  + + K DY N+PTVVF+    G  G +E K
Sbjct  277435  VAIAAGRKLAHRLFECKKDSKLDYDNIPTVVFSHPPIGTVGLTEGK  277572


> NIVO01048552.1 Ammotragus lervia isolate NAZ scaffold99285_len663_cov19, 
whole genome shotgun sequence
Length=664

 Score = 33.1 bits (74),  Expect(2) = 0.005, Method: Compositional matrix adjust.
 Identities = 36/173 (21%), Positives = 72/173 (42%), Gaps = 29/173 (17%)
 Frame = +2

Query  77   YDYDLIVIgggsggLSCAQEAAVLGRKVMVLDFVVPSPRGTAWGLGGTCVNVGCIPKKLM  136
            Y YD+I+IG G+ G+S  +EA    + +++++          W    TC  VGC+P K++
Sbjct  8    YMYDIIIIGAGTAGISAYKEAIKHTQNILIIN-------DGLWDT--TCARVGCMPSKIL  160

Query  137  HQAALLGQALTDSRKFGWEYSQQVRHSWATMTEAIQSHIGSLSWGHRLALREKAVTY---  193
               A     +  + + G + +  +       T  +  ++  L     L+  +   ++   
Sbjct  161  ISTANRMHGIQQTDQLGLKVAATID------TSGVMPYLRQLRDRFTLSTLKDVASWNKE  322

Query  194  --VNSFGEFVEHHKVKATNEKGQEVLYTAAKFVIATGERP----RYLGIPGDR  240
              ++   +F++   +        +  Y A  F+IA G  P    +Y    GDR
Sbjct  323  HKISGQAQFIDSQTIVVN-----QTHYQAKSFIIAVGSTPNMNKKYQDELGDR  466


 Score = 32.3 bits (72),  Expect(2) = 0.005, Method: Compositional matrix adjust.
 Identities = 15/42 (36%), Positives = 23/42 (55%), Gaps = 0/42 (0%)
 Frame = +1

Query  247  DDLFSLPYCPGATLVVGASYVALECAGFLAGLGLEVTVMVRS  288
            D +F L   P +  V+G+  +ALE A  +  L ++ TV  RS
Sbjct  472  DQIFELDTLPQSLAVIGSGVIALELAQAMQRLNVKTTVFARS  597


> NIVO01026070.1 Ammotragus lervia isolate NAZ scaffold20502_len18092_cov22, 
whole genome shotgun sequence
Length=13000

 Score = 45.4 bits (106),  Expect = 0.007, Method: Compositional matrix adjust.
 Identities = 34/83 (41%), Positives = 46/83 (55%), Gaps = 9/83 (11%)
 Frame = -1

Query  74   DPAYDYDLIVIgggsggLSCAQEAAVLGRKVMVLDFVVPSPRGTAWGLGGTCVNVGCIPK  133
            D    YD+++IG G GG  CA +AA LG K  V++      R T    GGTC+N+GCIP 
Sbjct  298  D*IMSYDVVIIGTGPGGYVCAIKAAQLGLKTAVIE-----KRDT---FGGTCLNIGCIPS  143

Query  134  K-LMHQAALLGQALTDSRKFGWE  155
            K L+H + +  +A     K G E
Sbjct  142  KALLHASEVFHEAGHTHAKLGVE  74


> NIVO01041139.1 Ammotragus lervia isolate NAZ scaffold5566_len105759_cov21, 
whole genome shotgun sequence
Length=104711

 Score = 41.6 bits (96),  Expect = 0.13, Method: Compositional matrix adjust.
 Identities = 49/196 (25%), Positives = 80/196 (41%), Gaps = 18/196 (9%)
 Frame = +1

Query  77     YDYDLIVIgggsggLSCAQEAAVLGRKVMVLDFVVPSPRGTAWGLGGTCVNVGCIPKKLM  136
              + +D I+IG G  G S A      G KV +++  +          GGTCVN GC+P K +
Sbjct  76456  HRFDAIIIGAGQAGPSLAGRLTASGMKVALVERKL---------FGGTCVNTGCMPTKTL  76608

Query  137    HQAALLGQALTDSRKFGWEYSQQVRHSWATMTEAIQSHIGSLSWGHRLALREKAVTYVNS  196
                +A          + G EY   +        + I++   +++   R  + E  +  +N 
Sbjct  76609  VASAYAAHMA----RRGAEYGVVIESPIRIDMKRIRARANTVATNARTGV-EAWLRGMND  76773

Query  197    FGEFVEHHKVKATNE-KGQEVLYTAAKFVIATGERPRYLGIPGDR--EYCITSDDLFSLP  253
                    H + +  +     E L  A +  I  G R     +PG    +Y +T+  +  L 
Sbjct  76774  LTVLQGHARFEGPDHLLVNEALLRAPRIFINVGGRASVPDMPGIEAVDY-LTNASILQLD  76950

Query  254    YCPGATLVVGASYVAL  269
                P   +VVG SYV L
Sbjct  76951  AVPRHLIVVGGSYVGL  76998


> NIVO01040210.1 Ammotragus lervia isolate NAZ scaffold82080_len2020_cov20, 
whole genome shotgun sequence
Length=1117

 Score = 38.1 bits (87),  Expect = 0.93, Method: Compositional matrix adjust.
 Identities = 34/127 (27%), Positives = 58/127 (46%), Gaps = 14/127 (11%)
 Frame = +3

Query  199  EFVEHHKVKATNEKGQEVLYTAAK------FVIATGERPRYLGIPGDREYCI---TSDDL  249
             FV        + + ++V++   K       ++ATG  PR L +     +C    + DD 
Sbjct  18   RFVAGTTAIGIDREAKDVIFAGGKRLAYDRLLLATGAVPRPLPLAAASRHCTCLRSYDDA  197

Query  250  FSLP--YCPGATLV-VGASYVALECAGFLAGLGLEVTVM--VRSVLLRGFDQEMAEKVGA  304
             ++     PGA +V VG  ++ LE A      G  VTV+     +L+RG  +E+A  + A
Sbjct  198  LAIRAHLQPGAHIVIVGGGFIGLELAASARQRGAVVTVLETQARILMRGVPEEIAAVIAA  377

Query  305  SMQQLGV  311
              ++ GV
Sbjct  378  RHRREGV  398


> NIVO01014600.1 Ammotragus lervia isolate NAZ scaffold3076_len1541011_cov72, 
whole genome shotgun sequence
Length=1542750

 Score = 37.0 bits (84),  Expect = 3.1, Method: Compositional matrix adjust.
 Identities = 15/38 (39%), Positives = 26/38 (68%), Gaps = 0/38 (0%)
 Frame = -1

Query  5       KELFSSLGVDCNILELDQVDEGASVQEALSEITSQRTV  42
               K LF  + V+  ++ELD ++ G+  Q+AL ++T +RTV
Sbjct  939627  KNLFHDMNVNYKVVELDMLEYGSQFQDALHKMTGERTV  939514


> NIVO01027699.1 Ammotragus lervia isolate NAZ scaffold741_len2671294_cov68, 
whole genome shotgun sequence
Length=2674788

 Score = 37.0 bits (84),  Expect = 3.2, Method: Compositional matrix adjust.
 Identities = 21/56 (38%), Positives = 34/56 (61%), Gaps = 5/56 (9%)
 Frame = -1

Query  351      NTVLLAIGRDSCTKKLGLEKIGVNVSEKTGKIPVNDEEQTS----VSYVYAVGDVL  402
                + +L+ IGR   T+ LGLE++G+ +  + G+IPVN   QT     V+Y+ A   +L
Sbjct  2355465  DVLLVCIGRRPFTQNLGLEELGIELDPR-GRIPVNTRFQTKIPK*VTYLPAFSIIL  2355301


> NIVO01071396.1 Ammotragus lervia isolate NAZ scaffold3435_len1345941_cov69, 
whole genome shotgun sequence
Length=1349101

 Score = 35.8 bits (81),  Expect = 7.3, Method: Compositional matrix adjust.
 Identities = 23/72 (32%), Positives = 35/72 (49%), Gaps = 1/72 (1%)
 Frame = -2

Query  392     VSYVYAVGDVLEGKPQLTPVAVQAGKLLARRLFGGRSEKCDYVNVPTVVFTPLEYGCCGY  451
               +S++  +   + G P LTP    +     R+   GR E C +VN P  VFT       G+
Sbjct  903855  ISFLEGIFFFIPGCPHLTPEEALSLSSETRK*-EGRGECCSFVNKPICVFTHRVGL*LGF  903679

Query  452     SEEKAGEVYQAE  463
               +  K GE+Y+ E
Sbjct  903678  TSYKMGEMYKTE  903643



Lambda      K        H        a         alpha
   0.319    0.136    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 374558526771


  Database: /cursos/20428/BI/genomes/2017/Ammotragus_lervia/genome.fa
    Posted date:  Nov 13, 2017  9:29 AM
  Number of letters in database: 2,650,836,958
  Number of sequences in database:  77,320



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 13
Window for multiple hits: 40
