TBLASTN 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.



Database: /cursos/20428/BI/genomes/2017/Ammotragus_lervia/genome.fa
           77,320 sequences; 2,650,836,958 total letters



Query= SPP00000280_2.0 # Protein # Thioredoxin reductase 2 (TXNRD2) # Cow

Length=475
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  NIVO01019577.1 Ammotragus lervia isolate NAZ scaffold5500_len73...    123   2e-27
  NIVO01028081.1 Ammotragus lervia isolate NAZ scaffold158735_len...  91.7    2e-19
  NIVO01041852.1 Ammotragus lervia isolate NAZ scaffold19593_len8...  77.0    1e-12
  NIVO01039896.1 Ammotragus lervia isolate NAZ scaffold2252_len10...  73.9    8e-12
  NIVO01001699.1 Ammotragus lervia isolate NAZ scaffold1294_len48...  72.8    2e-11
  NIVO01020513.1 Ammotragus lervia isolate NAZ scaffold283491_len...  64.3    2e-10
  NIVO01015737.1 Ammotragus lervia isolate NAZ scaffold12042_len1...  60.1    2e-07
  NIVO01018039.1 Ammotragus lervia isolate NAZ scaffold2881_len44...  58.9    4e-07
  NIVO01026070.1 Ammotragus lervia isolate NAZ scaffold20502_len1...  57.4    1e-06
  NIVO01041139.1 Ammotragus lervia isolate NAZ scaffold5566_len10...  56.6    2e-06
  NIVO01010479.1 Ammotragus lervia isolate NAZ scaffold1466_len24...  48.5    7e-04
  NIVO01048552.1 Ammotragus lervia isolate NAZ scaffold99285_len6...  42.7    0.002
  NIVO01064162.1 Ammotragus lervia isolate NAZ scaffold203060_len...  35.4    0.99 
  NIVO01048801.1 Ammotragus lervia isolate NAZ scaffold3899_len25...  37.4    1.8  
  NIVO01027699.1 Ammotragus lervia isolate NAZ scaffold741_len267...  36.2    4.1  


> NIVO01019577.1 Ammotragus lervia isolate NAZ scaffold5500_len738321_cov71, 
whole genome shotgun sequence
Length=736096

 Score =   123 bits (308),  Expect = 2e-27, Method: Compositional matrix adjust.
 Identities = 57/64 (89%), Positives = 60/64 (94%), Gaps = 0/64 (0%)
 Frame = +3

Query  223     QQMASLVTEHMAGHGTRILRGCAPEKVEKLPGQQLRVTWVDLTSDRKDAGTFDTVLWAIG  282
               QQMA LVTEHMAGHGTR+LRGCAPE+VEKLPGQQLRVTWVDL SDRKDAGTFDTVLWAIG
Sbjct  250317  QQMALLVTEHMAGHGTRVLRGCAPERVEKLPGQQLRVTWVDLASDRKDAGTFDTVLWAIG  250496

Query  283     RVPE  286
               + P 
Sbjct  250497  KGPR  250508


 Score =   104 bits (260),  Expect(2) = 8e-27, Method: Compositional matrix adjust.
 Identities = 48/52 (92%), Positives = 48/52 (92%), Gaps = 0/52 (0%)
 Frame = +2

Query  39      PSPQGTRWGLGGTCVNVGCIPKKLMHQAALLGGMIRDAPHYGWGVAQAPHSW  90
               P P GTRWGLGGTCVNVGCIPKKLMHQAALLGGMIRDAPHYGW VAQAPH W
Sbjct  239687  PLPPGTRWGLGGTCVNVGCIPKKLMHQAALLGGMIRDAPHYGWRVAQAPHDW  239842


 Score = 40.8 bits (94),  Expect(2) = 8e-27, Method: Compositional matrix adjust.
 Identities = 19/20 (95%), Positives = 20/20 (100%), Gaps = 0/20 (0%)
 Frame = +1

Query  24      AAQLGKKVAVLDYVEPSPQG  43
               AAQLGKKVAVLDYVEPSP+G
Sbjct  239524  AAQLGKKVAVLDYVEPSPRG  239583


 Score = 91.7 bits (226),  Expect = 2e-17, Method: Compositional matrix adjust.
 Identities = 45/52 (87%), Positives = 46/52 (88%), Gaps = 0/52 (0%)
 Frame = +2

Query  282     GRVPETASLNLEKAGVHTNPVTGKILVDAQETTSVPHIYAIGDVAEGRPELT  333
               GRVPETASLNLEKAGV TNPVTGKI VDAQE TS+PHIYAIGDVAE RP  T
Sbjct  256457  GRVPETASLNLEKAGVRTNPVTGKIFVDAQEATSIPHIYAIGDVAEVRPAPT  256612


 Score = 83.2 bits (204),  Expect = 1e-14, Method: Compositional matrix adjust.
 Identities = 39/46 (85%), Positives = 43/46 (93%), Gaps = 0/46 (0%)
 Frame = +2

Query  430     LGIKCGASYQQLMRTVGIHPTCAEEVAKLRISKRSGLDPTVTGCXG  475
               L  +CGAS+QQ++RTVGIHPTCAEEVAKLRISKRSGLDPTVTGC G
Sbjct  260270  LACRCGASFQQVIRTVGIHPTCAEEVAKLRISKRSGLDPTVTGC*G  260407


 Score = 78.2 bits (191),  Expect = 4e-13, Method: Compositional matrix adjust.
 Identities = 37/37 (100%), Positives = 37/37 (100%), Gaps = 0/37 (0%)
 Frame = +2

Query  360     VPTTVFTPLEYGCVGLSEEAAVARHGEEHVEVSPGPG  396
               VPTTVFTPLEYGCVGLSEEAAVARHGEEHVEVSPGPG
Sbjct  258095  VPTTVFTPLEYGCVGLSEEAAVARHGEEHVEVSPGPG  258205


 Score = 69.3 bits (168),  Expect = 2e-10, Method: Compositional matrix adjust.
 Identities = 33/38 (87%), Positives = 35/38 (92%), Gaps = 0/38 (0%)
 Frame = +1

Query  327     EGRPELTPTAIMAGRLLAQRLSGRTSDLMDYSSVPTTV  364
               +GRPELTPTAIMAGRLLAQRLSGRTSDLMDYSSV  + 
Sbjct  257617  QGRPELTPTAIMAGRLLAQRLSGRTSDLMDYSSVSASA  257730


 Score = 59.3 bits (142),  Expect = 3e-07, Method: Compositional matrix adjust.
 Identities = 32/45 (71%), Positives = 34/45 (76%), Gaps = 3/45 (7%)
 Frame = +1

Query  115     RKVKYFNVKASFVDTHTVCGVSKGGEET---LLSAEHIVIATGGR  156
               RKVKY NVKASFVDTHTVCGVSKGGEE    LL ++  V A  GR
Sbjct  240880  RKVKYLNVKASFVDTHTVCGVSKGGEEVSTCLLGSQGPVWAGVGR  241014


 Score = 55.5 bits (132),  Expect = 5e-06, Method: Compositional matrix adjust.
 Identities = 25/27 (93%), Positives = 25/27 (93%), Gaps = 0/27 (0%)
 Frame = +2

Query  160     PTHIEGALEYGITSDDLFWLKESPGKT  186
               P  IEGALEYGITSDDLFWLKESPGKT
Sbjct  242294  PGQIEGALEYGITSDDLFWLKESPGKT  242374


 Score = 55.1 bits (131),  Expect = 7e-06, Method: Compositional matrix adjust.
 Identities = 23/25 (92%), Positives = 25/25 (100%), Gaps = 0/25 (0%)
 Frame = +2

Query  91      ATLADAVQNHVKSLNWGHRIQLQDR  115
               AT+ADAVQNHVKSLNWGHR+QLQDR
Sbjct  240191  ATMADAVQNHVKSLNWGHRVQLQDR  240265


 Score = 50.1 bits (118),  Expect = 2e-04, Method: Compositional matrix adjust.
 Identities = 23/33 (70%), Positives = 25/33 (76%), Gaps = 0/33 (0%)
 Frame = +1

Query  132     VCGVSKGGEETLLSAEHIVIATGGRPRYPTHIE  164
               V   S    +TLLSAEHIVIATGGRPRYPTH+ 
Sbjct  241345  VTEASSVSSQTLLSAEHIVIATGGRPRYPTHVS  241443


 Score = 49.3 bits (116),  Expect = 4e-04, Method: Compositional matrix adjust.
 Identities = 24/27 (89%), Positives = 24/27 (89%), Gaps = 0/27 (0%)
 Frame = +3

Query  407     PTPLVLGLHFLGPNAGEVIQGFALGIK  433
               P  LVLGLHFLGPNAGEV QGFALGIK
Sbjct  259560  PPQLVLGLHFLGPNAGEVTQGFALGIK  259640


 Score = 47.0 bits (110),  Expect = 0.002, Method: Compositional matrix adjust.
 Identities = 26/37 (70%), Positives = 29/37 (78%), Gaps = 6/37 (16%)
 Frame = +2

Query  1       AGRQCYDLLVIGGGSGGLACAKEAA------QLGKKV  31
               AGRQ YDLLVIGGGSGGLACAKE A      +LG++V
Sbjct  236204  AGRQRYDLLVIGGGSGGLACAKEGACPVSRMRLGRRV  236314


 Score = 38.9 bits (89),  Expect = 0.57, Method: Compositional matrix adjust.
 Identities = 33/50 (66%), Positives = 36/50 (72%), Gaps = 0/50 (0%)
 Frame = +1

Query  179     LKESPGKTLVVGASYVALECAglltglgldttVMIRSVPLRAFDQQMASL  228
               +  SP   L+   + VALECAG LTGLGLDTTVMIRSVPLRAFDQ    L
Sbjct  249079  VPTSPSLALLSCLADVALECAGFLTGLGLDTTVMIRSVPLRAFDQVTPGL  249228


> NIVO01028081.1 Ammotragus lervia isolate NAZ scaffold158735_len630_cov85, 
whole genome shotgun sequence
Length=519

 Score = 91.7 bits (226),  Expect = 2e-19, Method: Compositional matrix adjust.
 Identities = 62/178 (35%), Positives = 95/178 (53%), Gaps = 17/178 (10%)
 Frame = +2

Query  22   KEAAQLGKKVAVLDYVEPSPQGTRWGLGGTCVNVGCIPKKLMHQAALLGGMIRDAPHYGW  81
            + AA+LG + AV++         R  LGGTCVNVGC+PKK+M   A+    + D   YG+
Sbjct  26   RRAAELGARAAVVE---------RHKLGGTCVNVGCVPKKVMWNTAVHSEFMHDHVDYGF  178

Query  82   GVAQAPHSWATLADAVQNHVKSLNWGHRIQLQDRKVKYFNVKASFV-DTHTVCGVSKGGE  140
               ++  +W  + +    +V  LN  ++  L    +   +  A+F  D      V+  G+
Sbjct  179  QSCESKFNWRIIKEKRDAYVSRLNTIYQNNLTKSHIDIIHGHAAFTCDPQPTVEVN--GK  352

Query  141  ETLLSAEHIVIATGGRPRYP--THIEGALEYGITSDDLFWLKESPGKTLVVGASYVAL  196
            +   +A HI+IATGG P  P  + I GA   GITSD  F L+E P +++ VGA Y+A+
Sbjct  353  K--YTAPHILIATGGVPSVPQESQIPGA-SLGITSDGFFQLEELPRRSVTVGAGYIAV  517


> NIVO01041852.1 Ammotragus lervia isolate NAZ scaffold19593_len861446_cov94, 
whole genome shotgun sequence
Length=853088

 Score = 77.0 bits (188),  Expect = 1e-12, Method: Compositional matrix adjust.
 Identities = 46/115 (40%), Positives = 63/115 (55%), Gaps = 10/115 (9%)
 Frame = -2

Query  355    MDYSSVPTTVFTPLEYGCVGLSEEAAVAR-HGEEHVEVSPGPG----VGCSMQAPV----  405
              +DY+ +PT VF+    G VGLSEE A+   H  +  E S  P       C  +  +    
Sbjct  95998  VDYNMIPTAVFSLPNIGTVGLSEEQALEEGHTVQVFESSFRPMKLTLTECQERTFMKLVV  95819

Query  406    -APTPLVLGLHFLGPNAGEVIQGFALGIKCGASYQQLMRTVGIHPTCAEEVAKLR  459
               A T  VLG H +GP AGE++QG A+ +K GA+ Q    T+G+HPT AEE   +R
Sbjct  95818  DAETDKVLGCHMVGPEAGEIVQGLAIAMKAGATKQHFDETIGVHPTAAEEFVTMR  95654


> NIVO01039896.1 Ammotragus lervia isolate NAZ scaffold2252_len1020358_cov73, 
whole genome shotgun sequence
Length=1021076

 Score = 73.9 bits (180),  Expect = 8e-12, Method: Compositional matrix adjust.
 Identities = 44/67 (66%), Positives = 51/67 (76%), Gaps = 0/67 (0%)
 Frame = -3

Query  183     PGKTLVVGASYVALECAglltglgldttVMIRSVPLRAFDQQMASLVTEHMAGHGTRILR  242
               PGKTLVVGASYVALECAG L G+GLD TVM+RS+ LR FDQ MA+ + EHM  HG + +R
Sbjct  931341  PGKTLVVGASYVALECAGFLAGIGLDVTVMVRSILLRGFDQDMANKIGEHMQEHGIKFIR  931162

Query  243     GCAPEKV  249
                  P KV
Sbjct  931161  EFVPIKV  931141


 Score = 68.2 bits (165),  Expect = 5e-10, Method: Compositional matrix adjust.
 Identities = 37/64 (58%), Positives = 47/64 (73%), Gaps = 1/64 (2%)
 Frame = -3

Query  303     TGKILVDAQETTSVPHIYAIGDVAEGRPELTPTAIMAGRLLAQRLSGRTSDLMDYSSVPT  362
               TGKI V  +E T+VP+IYAIGD+ EG+ ELTP AI AGRLLAQRL G ++  +   +V T
Sbjct  927231  TGKIPVTEEEQTNVPYIYAIGDILEGKLELTPVAIQAGRLLAQRLYGGSTVKVSVGAVTT  927052

Query  363     -TVF  365
                T+F
Sbjct  927051  ETLF  927040


 Score = 68.2 bits (165),  Expect = 5e-10, Method: Compositional matrix adjust.
 Identities = 32/47 (68%), Positives = 37/47 (79%), Gaps = 1/47 (2%)
 Frame = -2

Query  47      GLGGTCVNVGCIPKKLMHQAALLGGMIRDAPHYGWGVAQAPHSWATL  93
               GLGGTCVNVGCIPKKLMHQAALLG  +RD+ +YGW V +   +W  L
Sbjct  942454  GLGGTCVNVGCIPKKLMHQAALLGQALRDSRNYGWNVEETG-TWGKL  942317


 Score = 62.8 bits (151),  Expect = 2e-08, Method: Compositional matrix adjust.
 Identities = 28/43 (65%), Positives = 32/43 (74%), Gaps = 0/43 (0%)
 Frame = -3

Query  411     VLGLHFLGPNAGEVIQGFALGIKCGASYQQLMRTVGIHPTCAE  453
               V+G H LGPNAGEV QGFA  +KCG +  QL  T+GIHP CAE
Sbjct  913671  VVGFHILGPNAGEVTQGFAAALKCGLTKDQLDSTIGIHPVCAE  913543


 Score = 59.7 bits (143),  Expect = 3e-07, Method: Compositional matrix adjust.
 Identities = 28/37 (76%), Positives = 31/37 (84%), Gaps = 0/37 (0%)
 Frame = -3

Query  356     DYSSVPTTVFTPLEYGCVGLSEEAAVARHGEEHVEVS  392
               DY +VPTTVFTPLEYG  GLSEE AV + GEE+VEVS
Sbjct  920319  DYENVPTTVFTPLEYGSCGLSEEKAVEKFGEENVEVS  920209


 Score = 52.8 bits (125),  Expect = 3e-05, Method: Compositional matrix adjust.
 Identities = 21/46 (46%), Positives = 30/46 (65%), Gaps = 0/46 (0%)
 Frame = -1

Query  87      PHSWATLADAVQNHVKSLNWGHRIQLQDRKVKYFNVKASFVDTHTV  132
                H W  + +AVQNH+ SLNWG+R+ L+++KV Y N    FV  H +
Sbjct  933659  KHDWERMTEAVQNHIGSLNWGYRVALREKKVTYENSYGEFVGPHRI  933522


 Score = 40.4 bits (93),  Expect = 0.21, Method: Compositional matrix adjust.
 Identities = 17/26 (65%), Positives = 21/26 (81%), Gaps = 0/26 (0%)
 Frame = -2

Query  22      KEAAQLGKKVAVLDYVEPSPQGTRWG  47
               +EAA+  KKV VLD+V P+P GTRWG
Sbjct  944929  QEAAKYDKKVMVLDFVTPTPLGTRWG  944852


> NIVO01001699.1 Ammotragus lervia isolate NAZ scaffold1294_len4820224_cov71, 
whole genome shotgun sequence
Length=4805144

 Score = 72.8 bits (177),  Expect = 2e-11, Method: Compositional matrix adjust.
 Identities = 48/80 (60%), Positives = 54/80 (68%), Gaps = 0/80 (0%)
 Frame = +1

Query  171      ITSDDLFWLKESPGKTLVVGASYVALECAglltglgldttVMIRSVPLRAFDQQMASLVT  230
                + SDDLF L   PG TLVVGASYVALECAG L GLGL+ TVM+RSV LR FDQ+MA  V 
Sbjct  4548922  LCSDDLFSLPYCPGTTLVVGASYVALECAGFLAGLGLEVTVMVRSVLLRGFDQEMAEKVG  4549101

Query  231      EHMAGHGTRILRGCAPEKVE  250
                  +   G R LR   P +V 
Sbjct  4549102  ACLQQLGVRFLRKFVPVEVS  4549161


 Score = 70.9 bits (172),  Expect = 9e-11, Method: Compositional matrix adjust.
 Identities = 32/56 (57%), Positives = 45/56 (80%), Gaps = 0/56 (0%)
 Frame = +3

Query  303      TGKILVDAQETTSVPHIYAIGDVAEGRPELTPTAIMAGRLLAQRLSGRTSDLMDYS  358
                TGKI V+ +E TSVP++YA+GDV EG+P+LTP A+ AG+LLA+RL G  S+ + +S
Sbjct  4557231  TGKIPVNGEEQTSVPYVYAVGDVLEGKPQLTPVAVRAGKLLARRLFGGRSEKVSFS  4557398


 Score = 62.8 bits (151),  Expect = 3e-08, Method: Compositional matrix adjust.
 Identities = 28/39 (72%), Positives = 32/39 (82%), Gaps = 0/39 (0%)
 Frame = +3

Query  47       GLGGTCVNVGCIPKKLMHQAALLGGMIRDAPHYGWGVAQ  85
                GLGGTCVNVGCIPKKLMHQAALLG  + D+  +GW  +Q
Sbjct  4545639  GLGGTCVNVGCIPKKLMHQAALLGQALTDSRKFGWEYSQ  4545755


 Score = 61.2 bits (147),  Expect = 8e-08, Method: Compositional matrix adjust.
 Identities = 27/43 (63%), Positives = 32/43 (74%), Gaps = 0/43 (0%)
 Frame = +1

Query  411      VLGLHFLGPNAGEVIQGFALGIKCGASYQQLMRTVGIHPTCAE  453
                V+G H LGPNAGE+ QGFA  +KCG + Q L  T+GIHPTC E
Sbjct  4566481  VIGFHVLGPNAGEITQGFAAAMKCGLTKQLLDATIGIHPTCGE  4566609


 Score = 53.5 bits (127),  Expect = 2e-05, Method: Compositional matrix adjust.
 Identities = 22/45 (49%), Positives = 31/45 (69%), Gaps = 0/45 (0%)
 Frame = +2

Query  88       HSWATLADAVQNHVKSLNWGHRIQLQDRKVKYFNVKASFVDTHTV  132
                HSWAT+ +A+Q+HV SL+WG R+ L++  V Y N    FV+ H V
Sbjct  4547909  HSWATMTEAIQSHVGSLSWGRRLALRENAVTYVNSYGEFVEHHKV  4548043


 Score = 45.8 bits (107),  Expect = 0.004, Method: Compositional matrix adjust.
 Identities = 19/30 (63%), Positives = 26/30 (87%), Gaps = 0/30 (0%)
 Frame = +3

Query  18       LACAKEAAQLGKKVAVLDYVEPSPQGTRWG  47
                ++C++EAA LG+KV VLD+V PSP+GT WG
Sbjct  4544658  VSCSQEAAVLGRKVMVLDFVVPSPRGTAWG  4544747


 Score = 44.3 bits (103),  Expect = 0.013, Method: Compositional matrix adjust.
 Identities = 19/25 (76%), Positives = 20/25 (80%), Gaps = 0/25 (0%)
 Frame = +3

Query  356      DYSSVPTTVFTPLEYGCVGLSEEAA  380
                DY +VPT VFTPLEYGC G SEE A
Sbjct  4558002  DYVNVPTVVFTPLEYGCCGYSEEKA  4558076


> NIVO01020513.1 Ammotragus lervia isolate NAZ scaffold283491_len299_cov19_single, 
whole genome shotgun sequence
Length=299

 Score = 64.3 bits (155),  Expect = 2e-10, Method: Compositional matrix adjust.
 Identities = 43/101 (43%), Positives = 56/101 (55%), Gaps = 2/101 (2%)
 Frame = -1

Query  280  AIGRVPETASLNLEKAGVHTNPVTGKILVDAQETTSVPHIYAIGDVAEGRPELTPTAIMA  339
            AIGRVP TASL LE AGV  + + G I VD    TS  +I+A+GDV   R +LTP AI  
Sbjct  299  AIGRVPNTASLGLEAAGVAVDEM-GAIKVDGYSRTSRENIWAVGDVT-NRVQLTPVAIHE  126

Query  340  GRLLAQRLSGRTSDLMDYSSVPTTVFTPLEYGCVGLSEEAA  380
                 +          D++ + T VF+  E G VGL+E+ A
Sbjct  125  AMCFLETALKNNPTKPDHALIATAVFSQPEIGTVGLTEQDA  3


> NIVO01015737.1 Ammotragus lervia isolate NAZ scaffold12042_len120434_cov41, 
whole genome shotgun sequence
Length=92000

 Score = 60.1 bits (144),  Expect = 2e-07, Method: Compositional matrix adjust.
 Identities = 73/265 (28%), Positives = 115/265 (43%), Gaps = 21/265 (8%)
 Frame = +2

Query  214  RSVPLRAFDQQMASLVTEHMAGHGTRILRGCAPEKVEKLPGQQLRVTWVDLTSDRKDAGT  273
            R   L   D+++    T  +     +++ G   EKVE+    +  VT   L + R     
Sbjct  77   RETMLEFIDKEIVEDFTYQLRDRNMKLIFGQKAEKVERDETGKCLVT---LGNGRVLKA-  244

Query  274  FDTVLWAIGRVPETASLNLEKAGVHTNPVTGKILVDAQE-TTSVPHIYAIGDVAEGRPEL  332
             +TVL+A GRV  T +LNL   G+  +   G++ VD +   TSVP+IYA GD+  G P L
Sbjct  245  -ETVLFAAGRVGATDTLNLSACGLEADS-RGRLKVDPETFQTSVPNIYAAGDII-GFPSL  415

Query  333  TPTAIMAGRLLAQRLSGRTSDLMDYSSVPTTVFTPLEYGCVGLSEEAAVARH-----GEE  387
              T++  GR+ A+   G  +        P  ++   E    GL+EE  + R      G  
Sbjct  416  ASTSMEQGRIAARHAVGAPAG-EPPQFFPYGIYAVPEISTCGLTEEEVIERGIPYECGIA  592

Query  388  HV-EVSPGPGVGCS----MQAPVAPTPLVLGLHFLGPNAGEVIQGFALGIKCGASYQQLM  442
            H  E S G  +G             T  +LG+H +G  A E++      +    + +  +
Sbjct  593  HFRETSRGHIMGLDSGLLKMIFSLKTRRLLGVHIVGEGATELVHIGQAVLNLKGTVEYFV  772

Query  443  RTVGIHPTCAE--EVAKLRISKRSG  465
                 +PT AE  ++A L    R G
Sbjct  773  ENTFNYPTLAEAYKIAGLDAWNRMG  847


> NIVO01018039.1 Ammotragus lervia isolate NAZ scaffold2881_len443227_cov46, 
whole genome shotgun sequence
Length=443000

 Score = 58.9 bits (141),  Expect = 4e-07, Method: Compositional matrix adjust.
 Identities = 68/251 (27%), Positives = 108/251 (43%), Gaps = 19/251 (8%)
 Frame = +1

Query  214     RSVPLRAFDQQMASLVTEHMAGHGTRILRGCAPEKVEKLPGQQLRVTWVDLTSDRKDAGT  273
               R   L   D+++    T  +     +++ G   EKVE+    +     V L + R     
Sbjct  305851  RETMLEFIDKEIVEDFTYQLRDRNMKLIFGQKAEKVERDENGK---CLVSLGNGR--VLK  306015

Query  274     FDTVLWAIGRVPETASLNLEKAGVHTNPVTGKILVDAQE-TTSVPHIYAIGDVAEGRPEL  332
                +TVL+A GRV  T +LNL   G+  +   G++ VD +   TSVP+IYA GD+  G P L
Sbjct  306016  TETVLFAAGRVGATDTLNLSACGLEADS-RGRLKVDPETFQTSVPNIYAAGDII-GFPSL  306189

Query  333     TPTAIMAGRLLAQRLSGRTSDLMDYSSVPTTVFTPLEYGCVGLSEEAAVARH-----GEE  387
                 T++  GR+ A+   G  +        P  ++   E    GL+EE  + R      G  
Sbjct  306190  ASTSMEQGRIAARHAVGAPAG-EPPQFFPYGIYAVPEISTCGLTEEEVIERGIPYECGIA  306366

Query  388     HV-EVSPGPGVGCS----MQAPVAPTPLVLGLHFLGPNAGEVIQGFALGIKCGASYQQLM  442
               H  E S G  +G             T  +LG+H +G  A E++      +    + +  +
Sbjct  306367  HFRETSRGHIMGLDSGLLKMIFSLKTRRLLGVHIVGEGATELVHIGQAVLNLKGTVEYFV  306546

Query  443     RTVGIHPTCAE  453
                    +PT AE
Sbjct  306547  ENTFNYPTLAE  306579


> NIVO01026070.1 Ammotragus lervia isolate NAZ scaffold20502_len18092_cov22, 
whole genome shotgun sequence
Length=13000

 Score = 57.4 bits (137),  Expect = 1e-06, Method: Compositional matrix adjust.
 Identities = 30/65 (46%), Positives = 41/65 (63%), Gaps = 9/65 (14%)
 Frame = -1

Query  6    YDLLVIGGGSGGLACAKEAAQLGKKVAVLDYVEPSPQGTRWGLGGTCVNVGCIPKK-LMH  64
            YD+++IG G GG  CA +AAQLG K AV++         R   GGTC+N+GCIP K L+H
Sbjct  283  YDVVIIGTGPGGYVCAIKAAQLGLKTAVIE--------KRDTFGGTCLNIGCIPSKALLH  128

Query  65   QAALL  69
             + + 
Sbjct  127  ASEVF  113


> NIVO01041139.1 Ammotragus lervia isolate NAZ scaffold5566_len105759_cov21, 
whole genome shotgun sequence
Length=104711

 Score = 56.6 bits (135),  Expect = 2e-06, Method: Compositional matrix adjust.
 Identities = 58/198 (29%), Positives = 83/198 (42%), Gaps = 26/198 (13%)
 Frame = +1

Query  6      YDLLVIGGGSGGLACAKEAAQLGKKVAVLDYVEPSPQGTRWGLGGTCVNVGCIPKKLMHQ  65
              +D ++IG G  G + A      G KVA+++         R   GGTCVN GC+P K +  
Sbjct  76462  FDAIIIGAGQAGPSLAGRLTASGMKVALVE---------RKLFGGTCVNTGCMPTKTLVA  76614

Query  66     AALLGGMIRDAPHYGWGVAQAP-----HSWATLADAVQNHVKSLNWGHRIQLQDRKVKYF  120
              +A    M R    YG  V ++P           A+ V  + ++        + D  V   
Sbjct  76615  SAYAAHMARRGAEYGV-VIESPIRIDMKRIRARANTVATNARTGVEAWLRGMNDLTVLQG  76791

Query  121    NVKASFVDTHTVCGVSKGGEETLLSAEHIVIATGGRPRYPTH--IEGALEYGITSDDLFW  178
              + +    D   V        E LL A  I I  GGR   P    IE A++Y +T+  +  
Sbjct  76792  HARFEGPDHLLV-------NEALLRAPRIFINVGGRASVPDMPGIE-AVDY-LTNASILQ  76944

Query  179    LKESPGKTLVVGASYVAL  196
              L   P   +VVG SYV L
Sbjct  76945  LDAVPRHLIVVGGSYVGL  76998


> NIVO01010479.1 Ammotragus lervia isolate NAZ scaffold1466_len2495677_cov73, 
whole genome shotgun sequence
Length=2495322

 Score = 48.5 bits (114),  Expect = 7e-04, Method: Compositional matrix adjust.
 Identities = 22/49 (45%), Positives = 31/49 (63%), Gaps = 0/49 (0%)
 Frame = +1

Query  411     VLGLHFLGPNAGEVIQGFALGIKCGASYQQLMRTVGIHPTCAEEVAKLR  459
               V+G+H  G    E++QGFA+ +K GA+      TV IHPT +EE+  LR
Sbjct  281005  VVGIHMQGIGCDEMLQGFAVAVKMGATKSDFDNTVAIHPTSSEELVTLR  281151


 Score = 37.0 bits (84),  Expect = 2.4, Method: Compositional matrix adjust.
 Identities = 20/43 (47%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
 Frame = +1

Query  336     AIMAGRLLAQRL-SGRTSDLMDYSSVPTTVFTPLEYGCVGLSE  377
               AI AGR LA RL   +    +DY ++PT VF+    G VGL+E
Sbjct  277438  AIAAGRKLAHRLFECKKDSKLDYDNIPTVVFSHPPIGTVGLTE  277566


 Score = 35.0 bits (79),  Expect = 8.8, Method: Compositional matrix adjust.
 Identities = 27/50 (54%), Positives = 33/50 (66%), Gaps = 9/50 (18%)
 Frame = +3

Query  6       YDLLVIGGGSGGLACAKEAAQLGKKVAVLDYVEPSPQGTRWGLGGTCVNV  55
               YD LVIGGGSGGLA A+ AA+LG + AV++         R  LGGTCV+ 
Sbjct  239127  YDYLVIGGGSGGLASARRAAELGARAAVVE---------RHKLGGTCVST  239249


> NIVO01048552.1 Ammotragus lervia isolate NAZ scaffold99285_len663_cov19, 
whole genome shotgun sequence
Length=664

 Score = 42.7 bits (99),  Expect(2) = 0.002, Method: Compositional matrix adjust.
 Identities = 42/177 (24%), Positives = 69/177 (39%), Gaps = 44/177 (25%)
 Frame = +2

Query  6    YDLLVIGGGSGGLACAKEAAQLGKKVAVLDYVEPSPQGTRWGLGGTCVNVGCIPKKLMHQ  65
            YD+++IG G+ G++  KEA +  + + +++          W    TC  VGC+P K++  
Sbjct  14   YDIIIIGAGTAGISAYKEAIKHTQNILIIN-------DGLWDT--TCARVGCMPSKILIS  166

Query  66   AALLGGMIRDAPHYGWGVA---------------QAPHSWATLADAVQNHVKSLNWGHRI  110
             A     I+     G  VA               +   + +TL D     V S N  H+I
Sbjct  167  TANRMHGIQQTDQLGLKVAATIDTSGVMPYLRQLRDRFTLSTLKD-----VASWNKEHKI  331

Query  111  QLQDRKVKYFNVKASFVDTHTVCGVSKGGEETLLSAEHIVIATGGRPRYPTHIEGAL  167
              Q          A F+D+ T+        +T   A+  +IA G  P      +  L
Sbjct  332  SGQ----------AQFIDSQTIV-----VNQTHYQAKSFIIAVGSTPNMNKKYQDEL  457


 Score = 24.3 bits (51),  Expect(2) = 0.002, Method: Compositional matrix adjust.
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 0/42 (0%)
 Frame = +1

Query  174  DDLFWLKESPGKTLVVGASYVALECAglltglgldttVMIRS  215
            D +F L   P    V+G+  +ALE A  +  L + TTV  RS
Sbjct  472  DQIFELDTLPQSLAVIGSGVIALELAQAMQRLNVKTTVFARS  597


> NIVO01064162.1 Ammotragus lervia isolate NAZ scaffold203060_len252_cov25_single, 
whole genome shotgun sequence
Length=252

 Score = 35.4 bits (80),  Expect = 0.99, Method: Composition-based stats.
 Identities = 18/53 (34%), Positives = 27/53 (51%), Gaps = 0/53 (0%)
 Frame = -1

Query  111  QLQDRKVKYFNVKASFVDTHTVCGVSKGGEETLLSAEHIVIATGGRPRYPTHI  163
            Q    +V++    ASFVD +T+  V   GE   ++   I++  G RP  P HI
Sbjct  171  QFARNRVQHIRGTASFVDANTMKVVKNDGEIMNVTGTSILLTIGTRPYRPPHI  13


> NIVO01048801.1 Ammotragus lervia isolate NAZ scaffold3899_len252964_cov32, 
whole genome shotgun sequence
Length=253520

 Score = 37.4 bits (85),  Expect = 1.8, Method: Compositional matrix adjust.
 Identities = 16/35 (46%), Positives = 23/35 (66%), Gaps = 0/35 (0%)
 Frame = -1

Query  1      AGRQCYDLLVIGGGSGGLACAKEAAQLGKKVAVLD  35
              A    YD +++GGG+ GL CA   A+ G+KV VL+
Sbjct  23336  ASHSHYDAIIVGGGNNGLVCANYLAREGRKVLVLE  23232


> NIVO01027699.1 Ammotragus lervia isolate NAZ scaffold741_len2671294_cov68, 
whole genome shotgun sequence
Length=2674788

 Score = 36.2 bits (82),  Expect = 4.1, Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
 Frame = -2

Query  319      IYAIGDVAEGRPELTPTAIMAGRLLAQRLSGRTSDLMDYSSVPTTVFTPLEYGCVGLSEE  378
                IYAIGDV  G P L   A   G +  + ++G    + DY+ VP+ ++T  E   VG SEE
Sbjct  2355053  IYAIGDVVAG-PMLAHKAEDEGIICVEGMAGGAVHI-DYNCVPSVIYTHPEVAWVGKSEE  2354880



Lambda      K        H        a         alpha
   0.318    0.135    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 296879200460


  Database: /cursos/20428/BI/genomes/2017/Ammotragus_lervia/genome.fa
    Posted date:  Nov 13, 2017  9:29 AM
  Number of letters in database: 2,650,836,958
  Number of sequences in database:  77,320



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 13
Window for multiple hits: 40
