TBLASTN 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.



Database: /cursos/20428/BI/genomes/2017/Ammotragus_lervia/genome.fa
           77,320 sequences; 2,650,836,958 total letters



Query= SPP00000034_1.0 # Protein # Thioredoxin reductase 1 (TR1) # Homo
sapiens # Complete

Length=499
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  NIVO01039896.1 Ammotragus lervia isolate NAZ scaffold2252_len10...    144   4e-34
  NIVO01001699.1 Ammotragus lervia isolate NAZ scaffold1294_len48...    135   3e-31
  NIVO01041852.1 Ammotragus lervia isolate NAZ scaffold19593_len8...  95.9    1e-18
  NIVO01019577.1 Ammotragus lervia isolate NAZ scaffold5500_len73...  85.5    3e-15
  NIVO01028081.1 Ammotragus lervia isolate NAZ scaffold158735_len...  76.6    4e-14
  NIVO01020513.1 Ammotragus lervia isolate NAZ scaffold283491_len...  59.3    1e-08
  NIVO01015737.1 Ammotragus lervia isolate NAZ scaffold12042_len1...  61.2    8e-08
  NIVO01018039.1 Ammotragus lervia isolate NAZ scaffold2881_len44...  57.4    1e-06
  NIVO01041139.1 Ammotragus lervia isolate NAZ scaffold5566_len10...  53.5    2e-05
  NIVO01010479.1 Ammotragus lervia isolate NAZ scaffold1466_len24...  48.9    6e-04
  NIVO01027699.1 Ammotragus lervia isolate NAZ scaffold741_len267...  37.7    1.4  
  NIVO01048552.1 Ammotragus lervia isolate NAZ scaffold99285_len6...  36.2    2.3  


> NIVO01039896.1 Ammotragus lervia isolate NAZ scaffold2252_len1020358_cov73, 
whole genome shotgun sequence
Length=1021076

 Score =   144 bits (363),  Expect = 4e-34, Method: Compositional matrix adjust.
 Identities = 68/73 (93%), Positives = 71/73 (97%), Gaps = 0/73 (0%)
 Frame = -3

Query  187     PYCPGKTLVVGASYVALECAGFLAGIGLDVTVMVRSILLRGFDQDMANKIGEHMEEHGIK  246
               PYCPGKTLVVGASYVALECAGFLAGIGLDVTVMVRSILLRGFDQDMANKIGEHM+EHGIK
Sbjct  931350  PYCPGKTLVVGASYVALECAGFLAGIGLDVTVMVRSILLRGFDQDMANKIGEHMQEHGIK  931171

Query  247     FIRQFVPIKVEQI  259
               FIR+FVPIKV  +
Sbjct  931170  FIREFVPIKVSGV  931132


 Score =   101 bits (251),  Expect = 2e-20, Method: Compositional matrix adjust.
 Identities = 52/65 (80%), Positives = 56/65 (86%), Gaps = 1/65 (2%)
 Frame = -3

Query  312     KTGKIPVTDEEQTNVPYIYAIGDILEDKVELTPVAIQAGRLLAQRLYAGSTVKCDYENVP  371
               +TGKIPVT+EEQTNVPYIYAIGDILE K+ELTPVAIQAGRLLAQRLY GSTVK     V 
Sbjct  927234  RTGKIPVTEEEQTNVPYIYAIGDILEGKLELTPVAIQAGRLLAQRLYGGSTVKVSVGAVT  927055

Query  372     T-TVF  375
               T T+F
Sbjct  927054  TETLF  927040


 Score = 99.4 bits (246),  Expect = 1e-19, Method: Compositional matrix adjust.
 Identities = 42/54 (78%), Positives = 48/54 (89%), Gaps = 0/54 (0%)
 Frame = -1

Query  90      VEETVKHDWDRMIEAVQNHIGSLNWGYRVALREKKVVYENAYGQFIGPHRIKAT  143
               +   VKHDW+RM EAVQNHIGSLNWGYRVALREKKV YEN+YG+F+GPHRIK +
Sbjct  933674  LSRAVKHDWERMTEAVQNHIGSLNWGYRVALREKKVTYENSYGEFVGPHRIKVS  933513


 Score = 95.1 bits (235),  Expect = 2e-18, Method: Compositional matrix adjust.
 Identities = 44/46 (96%), Positives = 45/46 (98%), Gaps = 0/46 (0%)
 Frame = -3

Query  433     ERVVGFHVLGPNAGEVTQGFAAALKCGLTKKQLDSTIGIHPVCAEV  478
               ERVVGFH+LGPNAGEVTQGFAAALKCGLTK QLDSTIGIHPVCAEV
Sbjct  913677  ERVVGFHILGPNAGEVTQGFAAALKCGLTKDQLDSTIGIHPVCAEV  913540


 Score = 84.0 bits (206),  Expect = 7e-15, Method: Compositional matrix adjust.
 Identities = 39/49 (80%), Positives = 43/49 (88%), Gaps = 2/49 (4%)
 Frame = -2

Query  54      GLGGTCVNVGCIPKKLMHQAALLGQALQDSRNYGWKVEETVKHDWDRMI  102
               GLGGTCVNVGCIPKKLMHQAALLGQAL+DSRNYGW VEET    W +++
Sbjct  942454  GLGGTCVNVGCIPKKLMHQAALLGQALRDSRNYGWNVEET--GTWGKLL  942314


 Score = 81.6 bits (200),  Expect = 4e-14, Method: Compositional matrix adjust.
 Identities = 38/38 (100%), Positives = 38/38 (100%), Gaps = 0/38 (0%)
 Frame = -3

Query  142     ATNNKGKEKIYSAERFLIATGERPRYLGIPGDKEYCIS  179
               ATNNKGKEKIYSAERFLIATGERPRYLGIPGDKEYCIS
Sbjct  933132  ATNNKGKEKIYSAERFLIATGERPRYLGIPGDKEYCIS  933019


 Score = 78.2 bits (191),  Expect = 5e-13, Method: Compositional matrix adjust.
 Identities = 36/46 (78%), Positives = 41/46 (89%), Gaps = 0/46 (0%)
 Frame = -3

Query  364     KCDYENVPTTVFTPLEYGACGLSEEKAVEKFGEENIEVYHSYFWPL  409
               +CDYENVPTTVFTPLEYG+CGLSEEKAVEKFGEEN+EV  +  + L
Sbjct  920325  QCDYENVPTTVFTPLEYGSCGLSEEKAVEKFGEENVEVSFTLHYLL  920188


 Score = 73.6 bits (179),  Expect = 2e-11, Method: Compositional matrix adjust.
 Identities = 31/42 (74%), Positives = 34/42 (81%), Gaps = 2/42 (5%)
 Frame = -3

Query  401     VYHSYFWPLEWTIPSRDNNKCYAKIICNTKDNERVVGFHVLG  442
               VYHSYFWPLEWTIPSRDNNKCYAK++CN KDN  V   H+  
Sbjct  917832  VYHSYFWPLEWTIPSRDNNKCYAKVVCNIKDN--VSAIHIYS  917713


 Score = 57.0 bits (136),  Expect = 2e-06, Method: Compositional matrix adjust.
 Identities = 27/32 (84%), Positives = 30/32 (94%), Gaps = 0/32 (0%)
 Frame = -1

Query  256     VEQIEAGTPGRLRVVAQSTNSEEIIEGEYNTV  287
               VEQIEAGTPGRLRVVA+STN ++ IEGEYNTV
Sbjct  929468  VEQIEAGTPGRLRVVAKSTNGDQTIEGEYNTV  929373


 Score = 50.8 bits (120),  Expect = 1e-04, Method: Compositional matrix adjust.
 Identities = 24/26 (92%), Positives = 25/26 (96%), Gaps = 0/26 (0%)
 Frame = -2

Query  287     VMLAIGRDACTRKIGLETVGVKINEK  312
               V+LAIGRDACTRKIGLE VGVKINEK
Sbjct  928801  VLLAIGRDACTRKIGLENVGVKINEK  928724


 Score = 39.7 bits (91),  Expect = 0.38, Method: Compositional matrix adjust.
 Identities = 17/17 (100%), Positives = 17/17 (100%), Gaps = 0/17 (0%)
 Frame = -2

Query  38      VMVLDFVTPTPLGTRWG  54
               VMVLDFVTPTPLGTRWG
Sbjct  944902  VMVLDFVTPTPLGTRWG  944852


 Score = 38.9 bits (89),  Expect = 0.70, Method: Compositional matrix adjust.
 Identities = 18/23 (78%), Positives = 20/23 (87%), Gaps = 0/23 (0%)
 Frame = -1

Query  477     EVFTTLSVTKRSGASILQAGCXG  499
               +VFTTLSVTKRSG +ILQ GC G
Sbjct  907961  QVFTTLSVTKRSGGNILQTGC*G  907893


> NIVO01001699.1 Ammotragus lervia isolate NAZ scaffold1294_len4820224_cov71, 
whole genome shotgun sequence
Length=4805144

 Score =   135 bits (340),  Expect = 3e-31, Method: Compositional matrix adjust.
 Identities = 65/101 (64%), Positives = 80/101 (79%), Gaps = 7/101 (7%)
 Frame = +1

Query  157      FLIATGERPRYLGIPGDKEYCISSDDLFSLPYCPGKTLVVGASYVALECAGFLAGIGLDV  216
                F +A G  PR     G    C  SDDLFSLPYCPG TLVVGASYVALECAGFLAG+GL+V
Sbjct  4548880  FALAPGTVPR-----GSPSLC--SDDLFSLPYCPGTTLVVGASYVALECAGFLAGLGLEV  4549038

Query  217      TVMVRSILLRGFDQDMANKIGEHMEEHGIKFIRQFVPIKVE  257
                TVMVRS+LLRGFDQ+MA K+G  +++ G++F+R+FVP++V 
Sbjct  4549039  TVMVRSVLLRGFDQEMAEKVGACLQQLGVRFLRKFVPVEVS  4549161


 Score =   102 bits (255),  Expect = 7e-21, Method: Compositional matrix adjust.
 Identities = 55/146 (38%), Positives = 73/146 (50%), Gaps = 56/146 (38%)
 Frame = +2

Query  90       VEETVKHDWDRMIEAVQNHIGSLNWGYRVALREKKVVYENAYGQFI--------------  135
                V   V+H W  M EA+Q+H+GSL+WG R+ALRE  V Y N+YG+F+              
Sbjct  4547891  VSPPVRHSWATMTEAIQSHVGSLSWGRRLALRENAVTYVNSYGEFVEHHKVKVSRAFGPI  4548070

Query  136      --------------------GPHRI----------------------KATNNKGKEKIYS  153
                                    GP  +                      KATN KG+E +Y+
Sbjct  4548071  GCPPYLCLRPREPGLRGPC*GPRPVCERPGVRSVWY*RKSEVCFAFSKATNEKGQEALYT  4548250

Query  154      AERFLIATGERPRYLGIPGDKEYCIS  179
                A +F+IATG+RPRYLGIPGD+EYCI+
Sbjct  4548251  AAKFVIATGQRPRYLGIPGDREYCIT  4548328


 Score = 84.7 bits (208),  Expect = 4e-15, Method: Compositional matrix adjust.
 Identities = 37/47 (79%), Positives = 43/47 (91%), Gaps = 0/47 (0%)
 Frame = +1

Query  432      NERVVGFHVLGPNAGEVTQGFAAALKCGLTKKQLDSTIGIHPVCAEV  478
                 +RV+GFHVLGPNAGE+TQGFAAA+KCGLTK+ LD+TIGIHP C EV
Sbjct  4566472  KDRVIGFHVLGPNAGEITQGFAAAMKCGLTKQLLDATIGIHPTCGEV  4566612


 Score = 80.1 bits (196),  Expect = 1e-13, Method: Compositional matrix adjust.
 Identities = 34/58 (59%), Positives = 48/58 (83%), Gaps = 0/58 (0%)
 Frame = +3

Query  310      NEKTGKIPVTDEEQTNVPYIYAIGDILEDKVELTPVAIQAGRLLAQRLYAGSTVKCDY  367
                + +TGKIPV  EEQT+VPY+YA+GD+LE K +LTPVA++AG+LLA+RL+ G + K  +
Sbjct  4557222  HNRTGKIPVNGEEQTSVPYVYAVGDVLEGKPQLTPVAVRAGKLLARRLFGGRSEKVSF  4557395


 Score = 73.2 bits (178),  Expect = 2e-11, Method: Compositional matrix adjust.
 Identities = 32/39 (82%), Positives = 35/39 (90%), Gaps = 0/39 (0%)
 Frame = +3

Query  54       GLGGTCVNVGCIPKKLMHQAALLGQALQDSRNYGWKVEE  92
                GLGGTCVNVGCIPKKLMHQAALLGQAL DSR +GW+  +
Sbjct  4545639  GLGGTCVNVGCIPKKLMHQAALLGQALTDSRKFGWEYSQ  4545755


 Score = 65.9 bits (159),  Expect = 4e-09, Method: Compositional matrix adjust.
 Identities = 33/74 (45%), Positives = 42/74 (57%), Gaps = 12/74 (16%)
 Frame = +1

Query  399      IEVYHSYFWPLEWTIPSRDNNKCYAKIICNTKDNERVVGFHVLGPNAGEVTQG-------  451
                ++VYH+ FWPLEWT+  RDNN CYAKIICN  DN R    HV+G     + +        
Sbjct  4562728  LQVYHTLFWPLEWTVACRDNNTCYAKIICNKLDNVR----HVVGSGHALILKFRF*SRIW  4562895

Query  452      -FAAALKCGLTKKQ  464
                 F  +LK  L  +Q
Sbjct  4562896  VFIISLKIALEARQ  4562937


 Score = 57.8 bits (138),  Expect = 9e-07, Method: Compositional matrix adjust.
 Identities = 27/41 (66%), Positives = 30/41 (73%), Gaps = 0/41 (0%)
 Frame = +3

Query  361      STVKCDYENVPTTVFTPLEYGACGLSEEKAVEKFGEENIEV  401
                S ++CDY NVPT VFTPLEYG CG SEEKA E    EN+ V
Sbjct  4557987  SVLQCDYVNVPTVVFTPLEYGCCGYSEEKAGEVCQAENLGV  4558109


 Score = 47.0 bits (110),  Expect = 0.002, Method: Compositional matrix adjust.
 Identities = 21/38 (55%), Positives = 28/38 (74%), Gaps = 0/38 (0%)
 Frame = +2

Query  253      PIKVEQIEAGTPGRLRVVAQSTNSEEIIEGEYNTVMLA  290
                P +V+Q+E G PGRL+VVA+ST   E +EG YNTV + 
Sbjct  4549835  PCQVQQLEKGLPGRLKVVAKSTEGTETMEGVYNTVSIC  4549948


 Score = 43.1 bits (100),  Expect = 0.037, Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 24/26 (92%), Gaps = 0/26 (0%)
 Frame = +3

Query  287      VMLAIGRDACTRKIGLETVGVKINEK  312
                V+LAIGRD+CT+K+GLE +GV I+EK
Sbjct  4556418  VLLAIGRDSCTKKLGLEKIGVNISEK  4556495


> NIVO01041852.1 Ammotragus lervia isolate NAZ scaffold19593_len861446_cov94, 
whole genome shotgun sequence
Length=853088

 Score = 95.9 bits (237),  Expect = 1e-18, Method: Compositional matrix adjust.
 Identities = 46/117 (39%), Positives = 74/117 (63%), Gaps = 4/117 (3%)
 Frame = -2

Query  366    DYENVPTTVFTPLEYGACGLSEEKAVEKFGEENIEVYHSYFWPLEWTIPSRDNNKCYAKI  425
              DY  +PT VF+    G  GLSEE+A+E+     ++V+ S F P++ T+ +    + + K+
Sbjct  95995  DYNMIPTAVFSLPNIGTVGLSEEQALEE--GHTVQVFESSFRPMKLTL-TECQERTFMKL  95825

Query  426    ICNTKDNERVVGFHVLGPNAGEVTQGFAAALKCGLTKKQLDSTIGIHPVCAEVFTTL  482
              + +  + ++V+G H++GP AGE+ QG A A+K G TK+  D TIG+HP  AE F T+
Sbjct  95824  VVDA-ETDKVLGCHMVGPEAGEIVQGLAIAMKAGATKQHFDETIGVHPTAAEEFVTM  95657


> NIVO01019577.1 Ammotragus lervia isolate NAZ scaffold5500_len738321_cov71, 
whole genome shotgun sequence
Length=736096

 Score = 85.5 bits (210),  Expect = 3e-15, Method: Compositional matrix adjust.
 Identities = 38/53 (72%), Positives = 44/53 (83%), Gaps = 1/53 (2%)
 Frame = +2

Query  46      PTPLGTRWGLGGTCVNVGCIPKKLMHQAALLGQALQDSRNYGWKVEETVKHDW  98
               P P GTRWGLGGTCVNVGCIPKKLMHQAALLG  ++D+ +YGW+V +   HDW
Sbjct  239687  PLPPGTRWGLGGTCVNVGCIPKKLMHQAALLGGMIRDAPHYGWRVAQ-APHDW  239842


 Score = 64.3 bits (155),  Expect = 9e-09, Method: Compositional matrix adjust.
 Identities = 31/81 (38%), Positives = 45/81 (56%), Gaps = 23/81 (28%)
 Frame = +3

Query  400     EVYHSYFWPLEWTIPSRDNNKCYAKI-----------------------ICNTKDNERVV  436
               +VYH+++ PLE+T+P RD ++CY K+                       +C  +  + V+
Sbjct  259398  QVYHAFYKPLEFTVPQRDASQCYVKVSVLWAWPGRTGPCHPR*PHAFQMVCLREPPQLVL  259577

Query  437     GFHVLGPNAGEVTQGFAAALK  457
               G H LGPNAGEVTQGFA  +K
Sbjct  259578  GLHFLGPNAGEVTQGFALGIK  259640


 Score = 55.1 bits (131),  Expect = 7e-06, Method: Compositional matrix adjust.
 Identities = 26/45 (58%), Positives = 32/45 (71%), Gaps = 0/45 (0%)
 Frame = +1

Query  186     LPYCPGKTLVVGASYVALECAGFLAGIGLDVTVMVRSILLRGFDQ  230
               +P  P   L+   + VALECAGFL G+GLD TVM+RS+ LR FDQ
Sbjct  249079  VPTSPSLALLSCLADVALECAGFLTGLGLDTTVMIRSVPLRAFDQ  249213


 Score = 53.1 bits (126),  Expect = 3e-05, Method: Compositional matrix adjust.
 Identities = 24/33 (73%), Positives = 27/33 (82%), Gaps = 0/33 (0%)
 Frame = +2

Query  369     NVPTTVFTPLEYGACGLSEEKAVEKFGEENIEV  401
                VPTTVFTPLEYG  GLSEE AV + GEE++EV
Sbjct  258092  QVPTTVFTPLEYGCVGLSEEAAVARHGEEHVEV  258190


 Score = 48.9 bits (115),  Expect = 6e-04, Method: Compositional matrix adjust.
 Identities = 28/69 (41%), Positives = 39/69 (57%), Gaps = 1/69 (1%)
 Frame = +2

Query  292     GRDACTRKIGLETVGVKINEKTGKIPVTDEEQTNVPYIYAIGDILEDKVELT-PVAIQAG  350
               GR   T  + LE  GV+ N  TGKI V  +E T++P+IYAIGD+ E +   T P     G
Sbjct  256457  GRVPETASLNLEKAGVRTNPVTGKIFVDAQEATSIPHIYAIGDVAEVRPAPTAPCPSDPG  256636

Query  351     RLLAQRLYA  359
                 ++  L+A
Sbjct  256637  HPVSPALWA  256663


 Score = 42.4 bits (98),  Expect = 0.057, Method: Compositional matrix adjust.
 Identities = 20/45 (44%), Positives = 27/45 (60%), Gaps = 0/45 (0%)
 Frame = +2

Query  455     ALKCGLTKKQLDSTIGIHPVCAEVFTTLSVTKRSGASILQAGCXG  499
               A +CG + +Q+  T+GIHP CAE    L ++KRSG      GC G
Sbjct  260273  ACRCGASFQQVIRTVGIHPTCAEEVAKLRISKRSGLDPTVTGC*G  260407


 Score = 39.3 bits (90),  Expect = 0.46, Method: Compositional matrix adjust.
 Identities = 24/65 (37%), Positives = 36/65 (55%), Gaps = 5/65 (8%)
 Frame = +3

Query  230     QDMANKIGEHMEEHGIKFIRQFVPIKVEQIEAGTPG-RLRVVAQSTNSEEIIEGEYNTVM  288
               Q MA  + EHM  HG + +R   P +VE++    PG +LRV      S+    G ++TV+
Sbjct  250317  QQMALLVTEHMAGHGTRVLRGCAPERVEKL----PGQQLRVTWVDLASDRKDAGTFDTVL  250484

Query  289     LAIGR  293
                AIG+
Sbjct  250485  WAIGK  250499


 Score = 38.5 bits (88),  Expect = 0.85, Method: Compositional matrix adjust.
 Identities = 18/39 (46%), Positives = 24/39 (62%), Gaps = 0/39 (0%)
 Frame = +1

Query  336     LEDKVELTPVAIQAGRLLAQRLYAGSTVKCDYENVPTTV  374
                + + ELTP AI AGRLLAQRL   ++   DY +V  + 
Sbjct  257614  FQGRPELTPTAIMAGRLLAQRLSGRTSDLMDYSSVSASA  257730


 Score = 37.7 bits (86),  Expect = 1.7, Method: Compositional matrix adjust.
 Identities = 14/23 (61%), Positives = 20/23 (87%), Gaps = 0/23 (0%)
 Frame = +2

Query  101     MIEAVQNHIGSLNWGYRVALREK  123
               M +AVQNH+ SLNWG+RV L+++
Sbjct  240197  MADAVQNHVKSLNWGHRVQLQDR  240265


> NIVO01028081.1 Ammotragus lervia isolate NAZ scaffold158735_len630_cov85, 
whole genome shotgun sequence
Length=519

 Score = 76.6 bits (187),  Expect = 4e-14, Method: Compositional matrix adjust.
 Identities = 53/156 (34%), Positives = 79/156 (51%), Gaps = 10/156 (6%)
 Frame = +2

Query  52   RWGLGGTCVNVGCIPKKLMHQAALLGQALQDSRNYGWKVEETVKHDWDRMIEAVQNHIGS  111
            R  LGGTCVNVGC+PKK+M   A+  + + D  +YG++  E+ K +W  + E    ++  
Sbjct  68   RHKLGGTCVNVGCVPKKVMWNTAVHSEFMHDHVDYGFQSCES-KFNWRIIKEKRDAYVSR  244

Query  112  LNWGYRVALREKKVVYENAYGQFI-GPHRIKATNNKGKEKIYSAERFLIATG---ERPRY  167
            LN  Y+  L +  +   + +  F   P      N K     Y+A   LIATG     P+ 
Sbjct  245  LNTIYQNNLTKSHIDIIHGHAAFTCDPQPTVEVNGKK----YTAPHILIATGGVPSVPQE  412

Query  168  LGIPGDKEYCISSDDLFSLPYCPGKTLVVGASYVAL  203
              IPG     I+SD  F L   P +++ VGA Y+A+
Sbjct  413  SQIPG-ASLGITSDGFFQLEELPRRSVTVGAGYIAV  517


> NIVO01020513.1 Ammotragus lervia isolate NAZ scaffold283491_len299_cov19_single, 
whole genome shotgun sequence
Length=299

 Score = 59.3 bits (142),  Expect = 1e-08, Method: Compositional matrix adjust.
 Identities = 37/101 (37%), Positives = 55/101 (54%), Gaps = 2/101 (2%)
 Frame = -1

Query  290  AIGRDACTRKIGLETVGVKINEKTGKIPVTDEEQTNVPYIYAIGDILEDKVELTPVAIQA  349
            AIGR   T  +GLE  GV ++E  G I V    +T+   I+A+GD+  ++V+LTPVAI  
Sbjct  299  AIGRVPNTASLGLEAAGVAVDEM-GAIKVDGYSRTSRENIWAVGDVT-NRVQLTPVAIHE  126

Query  350  GRLLAQRLYAGSTVKCDYENVPTTVFTPLEYGACGLSEEKA  390
                 +     +  K D+  + T VF+  E G  GL+E+ A
Sbjct  125  AMCFLETALKNNPTKPDHALIATAVFSQPEIGTVGLTEQDA  3


> NIVO01015737.1 Ammotragus lervia isolate NAZ scaffold12042_len120434_cov41, 
whole genome shotgun sequence
Length=92000

 Score = 61.2 bits (147),  Expect = 8e-08, Method: Compositional matrix adjust.
 Identities = 74/289 (26%), Positives = 124/289 (43%), Gaps = 25/289 (9%)
 Frame = +2

Query  197  GASYVALECAGFLAGIGLDVTVM-VRSILLRGFDQDMANKIGEHMEEHGIKFIRQFVPIK  255
            GA  + +E A   + +   VTV+  R  +L   D+++       + +  +K I      K
Sbjct  2    GAGVIGIEYATIFSALDTQVTVVEPRETMLEFIDKEIVEDFTYQLRDRNMKLIFGQKAEK  181

Query  256  VEQIEAG----TPGRLRVVAQSTNSEEIIEGEYNTVMLAIGRDACTRKIGLETVGVKINE  311
            VE+ E G    T G  RV+            +  TV+ A GR   T  + L   G++ + 
Sbjct  182  VERDETGKCLVTLGNGRVL------------KAETVLFAAGRVGATDTLNLSACGLEADS  325

Query  312  KTGKIPVTDEE-QTNVPYIYAIGDILEDKVELTPVAIQAGRLLAQRLYAGSTVKCDYENV  370
            + G++ V  E  QT+VP IYA GDI+     L   +++ GR +A R   G+      +  
Sbjct  326  R-GRLKVDPETFQTSVPNIYAAGDII-GFPSLASTSMEQGR-IAARHAVGAPAGEPPQFF  496

Query  371  PTTVFTPLEYGACGLSEEKAVEKFGEENIEVYHSYFWPLEWTIPSRDNNKCYAKIICNTK  430
            P  ++   E   CGL+EE+ +E+       + H +       I   D+     K+I + K
Sbjct  497  PYGIYAVPEISTCGLTEEEVIERGIPYECGIAH-FRETSRGHIMGLDSG--LLKMIFSLK  667

Query  431  DNERVVGFHVLGPNAGEVTQGFAAALKCGLTKKQLDSTIGIHPVCAEVF  479
               R++G H++G  A E+     A L    T +        +P  AE +
Sbjct  668  -TRRLLGVHIVGEGATELVHIGQAVLNLKGTVEYFVENTFNYPTLAEAY  811


> NIVO01018039.1 Ammotragus lervia isolate NAZ scaffold2881_len443227_cov46, 
whole genome shotgun sequence
Length=443000

 Score = 57.4 bits (137),  Expect = 1e-06, Method: Compositional matrix adjust.
 Identities = 70/283 (25%), Positives = 124/283 (44%), Gaps = 25/283 (9%)
 Frame = +1

Query  203     LECAGFLAGIGLDVTVM-VRSILLRGFDQDMANKIGEHMEEHGIKFIRQFVPIKVEQIEA  261
               +E A   + +   VTV+  R  +L   D+++       + +  +K I      K E++E 
Sbjct  305794  IEYATIFSALDTQVTVVEPRETMLEFIDKEIVEDFTYQLRDRNMKLI---FGQKAEKVER  305964

Query  262     GTPGRLRVVAQSTNSEEIIEGEYNTVMLAIGRDACTRKIGLETVGVKINEKTGKIPVTDE  321
                  G+  V   S  +  +++ E  TV+ A GR   T  + L   G++ + + G++ V  E
Sbjct  305965  DENGKCLV---SLGNGRVLKTE--TVLFAAGRVGATDTLNLSACGLEADSR-GRLKVDPE  306126

Query  322     E-QTNVPYIYAIGDILEDKVELTPVAIQAGRLLAQRLYAGSTVKCDYENVPTTVFTPLEY  380
                 QT+VP IYA GDI+     L   +++ GR +A R   G+      +  P  ++   E 
Sbjct  306127  TFQTSVPNIYAAGDII-GFPSLASTSMEQGR-IAARHAVGAPAGEPPQFFPYGIYAVPEI  306300

Query  381     GACGLSEEKAVEKFGEENIEVYHSYFWPLEWTIPSRDN----NKCYAKIICNTKDNERVV  436
                 CGL+EE+ +E+       + H       +   SR +    +    K+I + K   R++
Sbjct  306301  STCGLTEEEVIERGIPYECGIAH-------FRETSRGHIMGLDSGLLKMIFSLK-TRRLL  306456

Query  437     GFHVLGPNAGEVTQGFAAALKCGLTKKQLDSTIGIHPVCAEVF  479
               G H++G  A E+     A L    T +        +P  AE +
Sbjct  306457  GVHIVGEGATELVHIGQAVLNLKGTVEYFVENTFNYPTLAEAY  306585


> NIVO01041139.1 Ammotragus lervia isolate NAZ scaffold5566_len105759_cov21, 
whole genome shotgun sequence
Length=104711

 Score = 53.5 bits (127),  Expect = 2e-05, Method: Compositional matrix adjust.
 Identities = 42/152 (28%), Positives = 63/152 (41%), Gaps = 9/152 (6%)
 Frame = +1

Query  55     LGGTCVNVGCIPKKLMHQAALLGQALQDSRNYGWKVEETVKHDWDRMIEAVQNHIGS-LN  113
               GGTCVN GC+P K +  +A      +    YG  +E  ++ D  R I A  N + +   
Sbjct  76561  FGGTCVNTGCMPTKTLVASAYAAHMARRGAEYGVVIESPIRIDMKR-IRARANTVATNAR  76737

Query  114    WGYRVALR-EKKVVYENAYGQFIGPHRIKATNNKGKEKIYSAERFLIATGERPRYLGIPG  172
               G    LR    +     + +F GP  +        E +  A R  I  G R     +PG
Sbjct  76738  TGVEAWLRGMNDLTVLQGHARFEGPDHLLV-----NEALLRAPRIFINVGGRASVPDMPG  76902

Query  173    DKEY-CISSDDLFSLPYCPGKTLVVGASYVAL  203
               +    +++  +  L   P   +VVG SYV L
Sbjct  76903  IEAVDYLTNASILQLDAVPRHLIVVGGSYVGL  76998


> NIVO01010479.1 Ammotragus lervia isolate NAZ scaffold1466_len2495677_cov73, 
whole genome shotgun sequence
Length=2495322

 Score = 48.9 bits (115),  Expect = 6e-04, Method: Compositional matrix adjust.
 Identities = 23/49 (47%), Positives = 30/49 (61%), Gaps = 0/49 (0%)
 Frame = +1

Query  434     RVVGFHVLGPNAGEVTQGFAAALKCGLTKKQLDSTIGIHPVCAEVFTTL  482
               +VVG H+ G    E+ QGFA A+K G TK   D+T+ IHP  +E   TL
Sbjct  281002  QVVGIHMQGIGCDEMLQGFAVAVKMGATKSDFDNTVAIHPTSSEELVTL  281148


 Score = 42.7 bits (99),  Expect = 0.041, Method: Compositional matrix adjust.
 Identities = 23/49 (47%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
 Frame = +1

Query  345     VAIQAGRLLAQRLY-AGSTVKCDYENVPTTVFTPLEYGACGLSEEKAVE  392
               VAI AGR LA RL+      K DY+N+PT VF+    G  GL+E K ++
Sbjct  277435  VAIAAGRKLAHRLFECKKDSKLDYDNIPTVVFSHPPIGTVGLTEGKWLK  277581


> NIVO01027699.1 Ammotragus lervia isolate NAZ scaffold741_len2671294_cov68, 
whole genome shotgun sequence
Length=2674788

 Score = 37.7 bits (86),  Expect = 1.4, Method: Compositional matrix adjust.
 Identities = 21/64 (33%), Positives = 32/64 (50%), Gaps = 3/64 (5%)
 Frame = -2

Query  124      KVVYENAYGQFIGPHRIKATNNKGKEKIYSAERFLIATGERPRYLGIPGDKEY-CISSDD  182
                KVV+ N YG+  G +++ AT   G  ++   +  LIATG        PG   + C ++  
Sbjct  2366144  KVVHVNGYGKITGKNQVTATKADGSTQVIDTKNILIATGSEVTPF--PGITVFTCFTTAQ  2365971

Query  183      LFSL  186
                LF L
Sbjct  2365970  LFCL  2365959


 Score = 35.8 bits (81),  Expect = 6.5, Method: Compositional matrix adjust.
 Identities = 23/70 (33%), Positives = 39/70 (56%), Gaps = 7/70 (10%)
 Frame = -1

Query  271      AQSTNSEEIIEGEYNTVMLAIGRDACTRKIGLETVGVKINEKTGKIPVTDEEQTNVP---  327
                A S    E+I    + +++ IGR   T+ +GLE +G++++ + G+IPV    QT +P   
Sbjct  2355501  AASGGKAEVIT--CDVLLVCIGRRPFTQNLGLEELGIELDPR-GRIPVNTRFQTKIPK*V  2355331

Query  328      -YIYAIGDIL  336
                 Y+ A   IL
Sbjct  2355330  TYLPAFSIIL  2355301


> NIVO01048552.1 Ammotragus lervia isolate NAZ scaffold99285_len663_cov19, 
whole genome shotgun sequence
Length=664

 Score = 36.2 bits (82),  Expect = 2.3, Method: Compositional matrix adjust.
 Identities = 30/117 (26%), Positives = 44/117 (38%), Gaps = 24/117 (21%)
 Frame = +2

Query  58   TCVNVGCIPKKLMHQAALLGQALQDSRNYGWKVEETV---------KHDWDRMIEAVQNH  108
            TC  VGC+P K++   A     +Q +   G KV  T+         +   DR   +    
Sbjct  122  TCARVGCMPSKILISTANRMHGIQQTDQLGLKVAATIDTSGVMPYLRQLRDRFTLSTLKD  301

Query  109  IGSLNWGYRVALREKKVVYENAYGQFIGPHRIKATNNKGKEKIYSAERFLIATGERP  165
            + S N       +E K+   +   QFI    I           Y A+ F+IA G  P
Sbjct  302  VASWN-------KEHKI---SGQAQFIDSQTIVVNQTH-----YQAKSFIIAVGSTP  427



Lambda      K        H        a         alpha
   0.319    0.138    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 317835379316


  Database: /cursos/20428/BI/genomes/2017/Ammotragus_lervia/genome.fa
    Posted date:  Nov 13, 2017  9:29 AM
  Number of letters in database: 2,650,836,958
  Number of sequences in database:  77,320



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 13
Window for multiple hits: 40
