TBLASTN 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.



Database: /cursos/20428/BI/genomes/2017/Ammotragus_lervia/genome.fa
           77,320 sequences; 2,650,836,958 total letters



Query= SPP00000027_1.0 # Protein # Selenoprotein U2 (SelU2) # Homo sapiens
# Complete

Length=226
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  NIVO01069066.1 Ammotragus lervia isolate NAZ scaffold90_len3154...  91.7    1e-18


> NIVO01069066.1 Ammotragus lervia isolate NAZ scaffold90_len315485_cov69, 
whole genome shotgun sequence
Length=314677

 Score = 91.7 bits (226),  Expect = 1e-18, Method: Compositional matrix adjust.
 Identities = 42/46 (91%), Positives = 46/46 (100%), Gaps = 0/46 (0%)
 Frame = -1

Query  140    SGQSPHIKSNLLSGSLQSLWRAVTGPLFDFQGDPAQQGGTLILGPG  185
              SGQSPH+KSN+LSGS++SLWRAVTGPLFDFQGDPAQQGGTLILGPG
Sbjct  29758  SGQSPHVKSNILSGSIRSLWRAVTGPLFDFQGDPAQQGGTLILGPG  29621


 Score = 82.4 bits (202),  Expect = 1e-15, Method: Compositional matrix adjust.
 Identities = 39/54 (72%), Positives = 46/54 (85%), Gaps = 2/54 (4%)
 Frame = -2

Query  91     VTLIVIGQSSYH--HIEPFCKLTGYSHEIYVDPEREIYKRLGMKRGEEIASSGQ  142
               +LI + ++S +    +PFCKLTGYSHEIYVDPEREIYKRLGMKRGEEIASSG+
Sbjct  33354  FSLICLDKNSNYTFFFQPFCKLTGYSHEIYVDPEREIYKRLGMKRGEEIASSGK  33193


 Score = 82.4 bits (202),  Expect = 1e-15, Method: Compositional matrix adjust.
 Identities = 39/42 (93%), Positives = 41/42 (98%), Gaps = 0/42 (0%)
 Frame = -3

Query  185    GNNIHFIHRDRNRLDHKPINSVLQLVGVQHVNFTNRPSVIHV  226
              GNNIHFIH DRNRLDHKPINSVLQLVGVQHV+FT+RPSVIHV
Sbjct  23603  GNNIHFIHHDRNRLDHKPINSVLQLVGVQHVDFTSRPSVIHV  23478


 Score = 48.1 bits (113),  Expect = 2e-04, Method: Compositional matrix adjust.
 Identities = 20/21 (95%), Positives = 21/21 (100%), Gaps = 0/21 (0%)
 Frame = -3

Query  67     LCYICKEYVEDLAKIPRSFLQ  87
              LCYICKEYVEDLAKIP+SFLQ
Sbjct  34634  LCYICKEYVEDLAKIPKSFLQ  34572


 Score = 45.1 bits (105),  Expect = 0.002, Method: Compositional matrix adjust.
 Identities = 21/24 (88%), Positives = 22/24 (92%), Gaps = 0/24 (0%)
 Frame = -2

Query  82     PRSFLQEANVTLIVIGQSSYHHIE  105
              P S L+EANVTLIVIGQSSYHHIE
Sbjct  33696  PFSLLKEANVTLIVIGQSSYHHIE  33625


 Score = 40.4 bits (93),  Expect = 0.060, Method: Compositional matrix adjust.
 Identities = 41/54 (76%), Positives = 42/54 (78%), Gaps = 2/54 (4%)
 Frame = -3

Query  1      MAAP--APVTRQVSGAAALVPAPSGPDSGQplaaavaelpvldaRGQRVPFGAL  52
              MA P  APVTRQVSG AA  P PSGP S QPLAAAVAELPVLDA G+ VPFG L
Sbjct  35267  MADPSEAPVTRQVSGHAAPAPVPSGPASWQPLAAAVAELPVLDASGRPVPFGEL  35106



Lambda      K        H        a         alpha
   0.320    0.138    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 87386999900


  Database: /cursos/20428/BI/genomes/2017/Ammotragus_lervia/genome.fa
    Posted date:  Nov 13, 2017  9:29 AM
  Number of letters in database: 2,650,836,958
  Number of sequences in database:  77,320



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 13
Window for multiple hits: 40
