TBLASTN 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.



Database: /cursos/20428/BI/genomes/2017/Ammotragus_lervia/genome.fa
           77,320 sequences; 2,650,836,958 total letters



Query= SPP00000026_1.0 # Protein # Selenoprotein U1 (SelU1) # Homo sapiens
# Complete

Length=229
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  NIVO01064043.1 Ammotragus lervia isolate NAZ scaffold4425_len37...  97.4    2e-20
  NIVO01017783.1 Ammotragus lervia isolate NAZ scaffold4661_len20...  52.4    7e-06
  NIVO01020843.1 Ammotragus lervia isolate NAZ scaffold1023_len19...  33.5    8.2  


> NIVO01064043.1 Ammotragus lervia isolate NAZ scaffold4425_len372517_cov72, 
whole genome shotgun sequence
Length=374981

 Score = 97.4 bits (241),  Expect = 2e-20, Method: Compositional matrix adjust.
 Identities = 46/56 (82%), Positives = 51/56 (91%), Gaps = 0/56 (0%)
 Frame = -3

Query  137    KKKFYGPQRRKMMFMGFIRLGVWYNFFRAWNGGFSGNLEGEGFILGGVFVVGSGKQ  192
              +KKFYGPQ RKM+FMGF+RLGV  NFFRAW GGFSGNL+GEGFILGGVFV+G GKQ
Sbjct  26814  QKKFYGPQERKMVFMGFVRLGVLQNFFRAWKGGFSGNLDGEGFILGGVFVMGPGKQ  26647


 Score = 93.6 bits (231),  Expect = 3e-19, Method: Compositional matrix adjust.
 Identities = 46/64 (72%), Positives = 51/64 (80%), Gaps = 0/64 (0%)
 Frame = -3

Query  74     GAVIMAVRRPGCFLCREEAADLSSLKSMLDQLGVPLYAVVKEHIRTEVKDFQPYFKGEIF  133
              G  +  VR P   +  +EAADLSSLK  LD+LGVPLYAVVKEHI+ EVKDFQPYFKGEIF
Sbjct  27567  GHRVPGVRAPDLSIFLQEAADLSSLKPRLDELGVPLYAVVKEHIKNEVKDFQPYFKGEIF  27388

Query  134    LDEK  137
              LDEK
Sbjct  27387  LDEK  27376


 Score = 81.6 bits (200),  Expect = 3e-15, Method: Compositional matrix adjust.
 Identities = 53/59 (90%), Positives = 58/59 (98%), Gaps = 0/59 (0%)
 Frame = -2

Query  1      MSFLQDPSFFTMGMWSIgagalgaaalalllaNTDVFLSKPQKAALEYLEDIDLKTLEK  59
              MSFLQDPSFF+MGMWSIGAGA+G AALALLLANTD+FL+KPQKAALEYLEDIDLKT+EK
Sbjct  30496  MSFLQDPSFFSMGMWSIGAGAVGVAALALLLANTDMFLAKPQKAALEYLEDIDLKTMEK  30320


 Score = 65.5 bits (158),  Expect = 4e-10, Method: Compositional matrix adjust.
 Identities = 31/37 (84%), Positives = 34/37 (92%), Gaps = 0/37 (0%)
 Frame = -1

Query  193    GILLEHREKEFGDKVNLLSVLEAAKMIKPQTLASEKK  229
              GILLEHREKEFGDKVNL SVLEAA+ I+PQT ASEK+
Sbjct  22916  GILLEHREKEFGDKVNLTSVLEAARKIRPQTSASEKQ  22806


 Score = 61.2 bits (147),  Expect = 8e-09, Method: Compositional matrix adjust.
 Identities = 27/28 (96%), Positives = 27/28 (96%), Gaps = 0/28 (0%)
 Frame = -1

Query  63     TFKAKELWEKNGAVIMAVRRPGCFLCRE  90
              TFKAK LWEKNGAVIMAVRRPGCFLCRE
Sbjct  28292  TFKAKALWEKNGAVIMAVRRPGCFLCRE  28209


> NIVO01017783.1 Ammotragus lervia isolate NAZ scaffold4661_len2021309_cov71, 
whole genome shotgun sequence
Length=2015921

 Score = 52.4 bits (124),  Expect = 7e-06, Method: Compositional matrix adjust.
 Identities = 27/76 (36%), Positives = 41/76 (54%), Gaps = 0/76 (0%)
 Frame = -1

Query  55      KTLEKEPRTFKAKELWEKNGAVIMAVRRPGCFLCREEAADLSSLKSMLDQLGVPLYAVVK  114
               ++L    +  + + LW++   V+  +RR GC +CR  A DLS+LK +LDQ GV L  V  
Sbjct  903989  RSLPAHTQAVELRSLWQEQACVVAGLRRFGCMVCRWIARDLSNLKGLLDQHGVRLVGVGP  903810

Query  115     EHIRTEVKDFQPYFKG  130
               E +  +      YF G
Sbjct  903809  EALGLQEFLDGGYFAG  903762


> NIVO01020843.1 Ammotragus lervia isolate NAZ scaffold1023_len1908145_cov70, 
whole genome shotgun sequence
Length=1910468

 Score = 33.5 bits (75),  Expect = 8.2, Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 44/93 (47%), Gaps = 5/93 (5%)
 Frame = +1

Query  34       TDVFLSKPQKAALEYLEDIDLKTLEKEPRTFKAKELWEKNGAVI---MAVRRPGCFLCRE  90
                T  F ++ ++ AL + + I LKT+   P+TFK     +++ +V+    A  RP   LC  
Sbjct  1130761  TSAFSNRKKRRALRHKKCISLKTMLNFPKTFKLLLRLQRHFSVL*TYQATARPDQGLCVN  1130940

Query  91       EAADLSSLKSMLDQLGVPLYAVVKEHIRTEVKD  123
                    LS  +     L V L  +VK    T ++D
Sbjct  1130941  --CSLSLCQRQHTHLMVQLICIVKRPSTTSIQD  1131033



Lambda      K        H        a         alpha
   0.322    0.140    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 90008609897


  Database: /cursos/20428/BI/genomes/2017/Ammotragus_lervia/genome.fa
    Posted date:  Nov 13, 2017  9:29 AM
  Number of letters in database: 2,650,836,958
  Number of sequences in database:  77,320



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 13
Window for multiple hits: 40
