TBLASTN 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.



Database: /cursos/20428/BI/genomes/2017/Ammotragus_lervia/genome.fa
           77,320 sequences; 2,650,836,958 total letters



Query= SPP00000024_1.0 # Protein # Selenoprotein S (SelS) # Homo sapiens #
Complete

Length=189
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  NIVO01025374.1 Ammotragus lervia isolate NAZ scaffold355_len229...    234   4e-68
  NIVO01066579.1 Ammotragus lervia isolate NAZ scaffold3616_len29...  50.8    1e-11
  NIVO01007148.1 Ammotragus lervia isolate NAZ scaffold5579_len71...  37.0    0.52 
  NIVO01058841.1 Ammotragus lervia isolate NAZ scaffold1159_len14...  36.2    0.78 


> NIVO01025374.1 Ammotragus lervia isolate NAZ scaffold355_len2295547_cov70, 
whole genome shotgun sequence
Length=2301301

 Score =   234 bits (598),  Expect = 4e-68, Method: Compositional matrix adjust.
 Identities = 150/177 (85%), Positives = 161/177 (91%), Gaps = 1/177 (1%)
 Frame = -2

Query  1        MERQEESLSARPALETEGLRFLHTTVGSLLATYGWYIVFSCILLYVVFQKLSarlralrq  60
                MER  + LS RP L+TEGL FLH TVGSL ATYGWYI+FSCILLYVVFQKLS RLRALRQ
Sbjct  1333749  MERDGDQLSTRPTLKTEGLHFLHVTVGSLPATYGWYIIFSCILLYVVFQKLSTRLRALRQ  1333570

Query  61       rqldraaaaVEPDVVVKRQEALAAARLKMQEELNAQVekhkeklkqleeekrrqkieMWD  120
                R LD+AAAA+EPD+VVK+QEALAAA LKMQEELNAQVEKHKEKL+QLE EKRRQKIEMWD
Sbjct  1333569  RHLDQAAAALEPDIVVKQQEALAAAHLKMQEELNAQVEKHKEKLRQLE*EKRRQKIEMWD  1333390

Query  121      SMQEGKSYKGNAKKPQEEDSPGPSTSSVL-KRKSDRKPLRGGGYNPLSGEGGGACSW  176
                SMQEGKSYKGN ++PQEEDSPGPSTSSV+ KRKSDRKPLRGGG NPLSGEGGG CSW
Sbjct  1333389  SMQEGKSYKGNTREPQEEDSPGPSTSSVIPKRKSDRKPLRGGGSNPLSGEGGGTCSW  1333219


> NIVO01066579.1 Ammotragus lervia isolate NAZ scaffold3616_len2975310_cov72, 
whole genome shotgun sequence
Length=2980834

 Score = 50.8 bits (120),  Expect(2) = 1e-11, Method: Compositional matrix adjust.
 Identities = 26/28 (93%), Positives = 27/28 (96%), Gaps = 1/28 (4%)
 Frame = +2

Query  136     QEEDSPGPSTSSVL-KRKSDRKPLRGGG  162
               QEEDSPGPSTSSV+ KRKSDRKPLRGGG
Sbjct  127910  QEEDSPGPSTSSVIPKRKSDRKPLRGGG  127993


 Score = 41.2 bits (95),  Expect(2) = 1e-11, Method: Compositional matrix adjust.
 Identities = 17/19 (89%), Positives = 18/19 (95%), Gaps = 0/19 (0%)
 Frame = +1

Query  118     MWDSMQEGKSYKGNAKKPQ  136
               MWDSMQEGKSYKGN +KPQ
Sbjct  127756  MWDSMQEGKSYKGNTRKPQ  127812


 Score = 59.7 bits (143),  Expect = 1e-08, Method: Compositional matrix adjust.
 Identities = 28/31 (90%), Positives = 29/31 (94%), Gaps = 0/31 (0%)
 Frame = +3

Query  22      LHTTVGSLLATYGWYIVFSCILLYVVFQKLS  52
               L  +VGSLLATYGWYIVFSCILLYVVFQKLS
Sbjct  122568  LFFSVGSLLATYGWYIVFSCILLYVVFQKLS  122660


 Score = 54.7 bits (130),  Expect = 5e-07, Method: Compositional matrix adjust.
 Identities = 26/27 (96%), Positives = 27/27 (100%), Gaps = 0/27 (0%)
 Frame = +3

Query  71      EPDVVVKRQEALAAARLKMQEELNAQV  97
               EPD+VVKRQEALAAARLKMQEELNAQV
Sbjct  124314  EPDIVVKRQEALAAARLKMQEELNAQV  124394


 Score = 44.3 bits (103),  Expect = 0.002, Method: Compositional matrix adjust.
 Identities = 20/25 (80%), Positives = 21/25 (84%), Gaps = 0/25 (0%)
 Frame = +1

Query  1       MERQEESLSARPALETEGLRFLHTT  25
               MER  + LSARPALETEGLRFLH T
Sbjct  121876  MERDGDQLSARPALETEGLRFLHVT  121950


 Score = 34.3 bits (77),  Expect = 3.3, Method: Compositional matrix adjust.
 Identities = 14/15 (93%), Positives = 14/15 (93%), Gaps = 0/15 (0%)
 Frame = +3

Query  162     GYNPLSGEGGGACSW  176
               GYNPLSGEGGG CSW
Sbjct  129783  GYNPLSGEGGGTCSW  129827


> NIVO01007148.1 Ammotragus lervia isolate NAZ scaffold5579_len719247_cov71, 
whole genome shotgun sequence
Length=719024

 Score = 37.0 bits (84),  Expect = 0.52, Method: Compositional matrix adjust.
 Identities = 50/128 (39%), Positives = 68/128 (53%), Gaps = 2/128 (2%)
 Frame = -1

Query  14    LETEGLRFLHTTVGSLLATYGWYIVFSCILLYVVFQKLSarlralrqrqldraaaaVEPD  73
             L+ E L FLH TVGS L T+GW + FS +   V   K          R+       +   
Sbjct  2075  LKNEELCFLHLTVGSFLGTHGW*M-FSVVTFSV*SFKSFPPS*RT*VREN*TELWEL*NM  1899

Query  74    VVVKRQEALAAARLKMQEELNAQVekhkekl-kqleeekrrqkieMWDSMQEGKSYKGNA  132
             V +  ++ALA+  L+MQ ELN Q EKH +KL +    +K  +KI M   ++EGKSY+  A
Sbjct  1898  VSLNNKKALASTPLEMQRELNTQTEKHTKKLWQLNLRKKGDKKINM*KRIKEGKSYQ*TA  1719

Query  133   KKPQEEDS  140
             K  QEE S
Sbjct  1718  K*SQEEKS  1695


> NIVO01058841.1 Ammotragus lervia isolate NAZ scaffold1159_len1406920_cov72, 
whole genome shotgun sequence
Length=1409327

 Score = 36.2 bits (82),  Expect = 0.78, Method: Compositional matrix adjust.
 Identities = 16/24 (67%), Positives = 19/24 (79%), Gaps = 0/24 (0%)
 Frame = +3

Query  1        MERQEESLSARPALETEGLRFLHT  24
                ME + + LSARP +ETEGLRFLH 
Sbjct  1223310  ME*EGDQLSARPTVETEGLRFLHV  1223381



Lambda      K        H        a         alpha
   0.313    0.130    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 57690729294


  Database: /cursos/20428/BI/genomes/2017/Ammotragus_lervia/genome.fa
    Posted date:  Nov 13, 2017  9:29 AM
  Number of letters in database: 2,650,836,958
  Number of sequences in database:  77,320



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 13
Window for multiple hits: 40
