TBLASTN 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.



Database: /cursos/20428/BI/genomes/2017/Ammotragus_lervia/genome.fa
           77,320 sequences; 2,650,836,958 total letters



Query= SPP00000020_1.0 # Protein # Selenoprotein P (SelP) # Homo sapiens #
Complete

Length=381
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  NIVO01048714.1 Ammotragus lervia isolate NAZ scaffold4518_len13...    140   2e-33


> NIVO01048714.1 Ammotragus lervia isolate NAZ scaffold4518_len1342136_cov72, 
whole genome shotgun sequence
Length=1337775

 Score =   140 bits (353),  Expect = 2e-33, Method: Compositional matrix adjust.
 Identities = 66/86 (77%), Positives = 74/86 (86%), Gaps = 0/86 (0%)
 Frame = +1

Query  55      LQASXYLCILQASKLEDLRVKLKKEGYSNISYIVVNHQGISSRLKYTHLKNKVSEHIPVY  114
               L  S +    +  +LEDLRVKL+KEGYSNISY+VVNHQ ISSRLKY HLKNKVSEHIPVY
Sbjct  511597  LNYSFFNIFSKYFRLEDLRVKLEKEGYSNISYVVVNHQEISSRLKYVHLKNKVSEHIPVY  511776

Query  115     QQEENQTDVWTLLNGSKDDFLIYDRC  140
               QQE++Q DVWTLLNG+KDDFLIYDRC
Sbjct  511777  QQEDDQPDVWTLLNGNKDDFLIYDRC  511854


 Score =   123 bits (308),  Expect = 9e-28, Method: Compositional matrix adjust.
 Identities = 82/127 (65%), Positives = 89/127 (70%), Gaps = 4/127 (3%)
 Frame = +3

Query  259     ENRDMP-ASEDLQDL--QKKLCRKRCINQLLCKLPTDSELAPRSXCCHCRHLIFEKTGSA  315
               +N D P  SE+LQ    QKKL RKRCINQLL + P DSE A  S CCHCRHL+FEKTGSA
Sbjct  516039  DNCDTPVGSENLQLSLPQKKL*RKRCINQLL*QFPKDSESALSSCCCHCRHLVFEKTGSA  516218

Query  316     ITXQCKENLPSLCSXQGLRAEENITESCQXRLPP-AAXQISQQLIPTEASASXRXKNQAK  374
               IT QC ENLPSLCS QGL AEEN+ ES Q RLPP A     QQL PTEAS     KN+AK
Sbjct  516219  IT*QCTENLPSLCS*QGLLAEENVIES*Q*RLPPAA*QAAGQQLNPTEASTK*S*KNKAK  516398

Query  375     KXEXPSN  381
                 + PSN
Sbjct  516399  M*K*PSN  516419


 Score = 96.7 bits (239),  Expect = 2e-19, Method: Compositional matrix adjust.
 Identities = 60/74 (81%), Positives = 63/74 (85%), Gaps = 0/74 (0%)
 Frame = +2

Query  1       MWRSlglalalcllPSGGTESQDQSSLCKQPPAWSIRDQDPMLNSNGSVTVVALLQASXY  60
               MWR LGLALALCLL + GTESQ QSS CKQPPAWSI+DQDPMLNS GSVTVVALLQAS Y
Sbjct  510434  MWRGLGLALALCLLLTRGTESQGQSSYCKQPPAWSIKDQDPMLNSYGSVTVVALLQAS*Y  510613

Query  61      LCILQASKLEDLRV  74
               LCILQAS+   L V
Sbjct  510614  LCILQASR*GSLSV  510655


 Score = 77.8 bits (190),  Expect = 3e-13, Method: Compositional matrix adjust.
 Identities = 35/54 (65%), Positives = 40/54 (74%), Gaps = 0/54 (0%)
 Frame = +3

Query  135     LIYDRCGRLVYHLGLPFSFLTFPYVEEAIKIAYCEKKCGNCSLTTLKDEDFCKR  188
               +I+ RCGRLVYHLGLP+SFLTF YVE++IK  YCE KCGNCSL       F  R
Sbjct  513819  VIFFRCGRLVYHLGLPYSFLTFTYVEDSIKTVYCEDKCGNCSLKVFFSIIFLWR  513980


 Score = 37.0 bits (84),  Expect = 2.0, Method: Compositional matrix adjust.
 Identities = 16/23 (70%), Positives = 18/23 (78%), Gaps = 0/23 (0%)
 Frame = +3

Query  177     LTTLKDEDFCKRVSLATVDKTVE  199
                 TL+DEDFCK VSLAT +KT E
Sbjct  515718  FQTLEDEDFCKNVSLATKEKTAE  515786



Lambda      K        H        a         alpha
   0.315    0.130    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 216585532232


  Database: /cursos/20428/BI/genomes/2017/Ammotragus_lervia/genome.fa
    Posted date:  Nov 13, 2017  9:29 AM
  Number of letters in database: 2,650,836,958
  Number of sequences in database:  77,320



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 13
Window for multiple hits: 40
