TBLASTN 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.



Database: /cursos/20428/BI/genomes/2017/Ammotragus_lervia/genome.fa
           77,320 sequences; 2,650,836,958 total letters



Query= SPP00000015_1.0 # Protein # Selenoprotein I (SelI) # Homo sapiens #
Complete

Length=397
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  NIVO01073408.1 Ammotragus lervia isolate NAZ scaffold346_len191...    281   5e-145
  NIVO01032443.1 Ammotragus lervia isolate NAZ scaffold4835_len35...    143   3e-34 
  NIVO01009358.1 Ammotragus lervia isolate NAZ scaffold14667_len2...  67.0    8e-10 
  NIVO01046283.1 Ammotragus lervia isolate NAZ scaffold2786_len65...  64.3    6e-09 


> NIVO01073408.1 Ammotragus lervia isolate NAZ scaffold346_len1912420_cov72, 
whole genome shotgun sequence
Length=1920326

 Score =   281 bits (720),  Expect(2) = 5e-145, Method: Compositional matrix adjust.
 Identities = 165/232 (71%), Positives = 183/232 (79%), Gaps = 5/232 (2%)
 Frame = +3

Query  168      ILSHWEKYNTGILFLPWGYDISQVTISFVYIVTAVVGVEAWYEPFLFNFLYRDLFTAMII  227
                ILSHWEK NTGILFLPWGYD+S+VTISFVY VTAVVGVEAW EPFLFNFLYRDLFTAMII
Sbjct  1883199  ILSHWEKCNTGILFLPWGYDMSRVTISFVYRVTAVVGVEAW*EPFLFNFLYRDLFTAMII  1883378

Query  228      GCALCVTLPMSLLNFFRSYKNNTLKLNSVYEAMVPLFSPCLLFILSTAWILWSPSDI--L  285
                GCALCVTLPMSLLNFFRSYKNN LK  S+      LFS   +     A+ +  P     L
Sbjct  1883379  GCALCVTLPMSLLNFFRSYKNNMLKQFSL*SCGSRLFSTSAIHF---AYSMDPPVSFRYL  1883549

Query  286      ELHPRVFYFMVGTAFANSTCQLIVCQMSSTRCPTLNWllvplflvvlvvnlgvASYVESI  345
                ELHPRV Y MVGTAFA+STCQLIVCQ+SSTRCPTLN LL+ LF++V+VV +GVA  VES 
Sbjct  1883550  ELHPRVLYLMVGTAFASSTCQLIVCQVSSTRCPTLNQLLLLLFVIVMVVKVGVAP*VES*  1883729

Query  346      llytlttaftlaHIHYGVRVVKQLSSHFQIYPFSLRKPNSDXLGMEEKNIGL  397
                +         LAH+H+GVRVVKQLS+ F IYPFSLRKPNSD L +EEKNIGL
Sbjct  1883730  MFRCSC*RLMLAHVHHGVRVVKQLSNRFHIYPFSLRKPNSDRLQVEEKNIGL  1883885


 Score =   258 bits (659),  Expect(2) = 5e-145, Method: Compositional matrix adjust.
 Identities = 124/145 (86%), Positives = 132/145 (91%), Gaps = 0/145 (0%)
 Frame = +2

Query  2        AGYEYVSPEQLAGFDKYKYSAVDTNPLSLYVMHPFWNTIVKVFPTWLAPNLITFSGFLLV  61
                A YEYVSPEQLAG +KYKY AVDTNPLSLYVMHPFWNT+VKVFPTWLAPNLITFSGFLL 
Sbjct  1882703  ASYEYVSPEQLAGVNKYKYRAVDTNPLSLYVMHPFWNTVVKVFPTWLAPNLITFSGFLLA  1882882

Query  62       VFNFLLMAYFDPDFYASAPGHKHVPDWVWIVVGILNFVAYTLDGVDGKQARRTNSSTPLG  121
                VFNFLLMAYFDPDFYASAPGHKHVPDWVWIVVGIL+F+AYTLDGVDGKQA RTN  T LG
Sbjct  1882883  VFNFLLMAYFDPDFYASAPGHKHVPDWVWIVVGILSFMAYTLDGVDGKQACRTNFITLLG  1883062

Query  122      ELFDHGLDSWSCVYFVVTVYSIFGR  146
                ELFDHGLDSWSC+YF+  V+  + R
Sbjct  1883063  ELFDHGLDSWSCIYFLSRVFHFWMR  1883137


> NIVO01032443.1 Ammotragus lervia isolate NAZ scaffold4835_len3564779_cov73, 
whole genome shotgun sequence
Length=3566933

 Score =   143 bits (361),  Expect = 3e-34, Method: Compositional matrix adjust.
 Identities = 87/88 (99%), Positives = 88/88 (100%), Gaps = 0/88 (0%)
 Frame = +2

Query  104      DGVDGKQARRTNSSTPLGELFDHGLDSWSCVYFVVTVYSIFGRGSTGvsvfvlylllwvv  163
                DGVDGKQARRTNSSTPLGELFDHGLDSWSCVYFVVTVYSIFGRGS+GVSVFVLYLLLWVV
Sbjct  1420442  DGVDGKQARRTNSSTPLGELFDHGLDSWSCVYFVVTVYSIFGRGSSGVSVFVLYLLLWVV  1420621

Query  164      lfsfILSHWEKYNTGILFLPWGYDISQV  191
                LFSFILSHWEKYNTGILFLPWGYDISQV
Sbjct  1420622  LFSFILSHWEKYNTGILFLPWGYDISQV  1420705


 Score =   117 bits (292),  Expect = 9e-26, Method: Compositional matrix adjust.
 Identities = 58/68 (85%), Positives = 61/68 (90%), Gaps = 0/68 (0%)
 Frame = +1

Query  239      LLNFFRSYKNNTLKLNSVYEAMVPLFSPCLLFILSTAWILWSPSDILELHPRVFYFMVGT  298
                L+ F RSYKNNTLK NSVYEA+VP FSPCLLFILSTAWIL SPSDILELHPRVFY MVGT
Sbjct  1429951  LIFFSRSYKNNTLKHNSVYEAVVPFFSPCLLFILSTAWILLSPSDILELHPRVFYLMVGT  1430130

Query  299      AFANSTCQ  306
                AFANST +
Sbjct  1430131  AFANSTVR  1430154


 Score = 78.2 bits (191),  Expect = 2e-13, Method: Compositional matrix adjust.
 Identities = 39/42 (93%), Positives = 39/42 (93%), Gaps = 0/42 (0%)
 Frame = +1

Query  192      TISFVYIVTAVVGVEAWYEPFLFNFLYRDLFTAMIIGCALCV  233
                TISFVYIVTAVVGVEAWYEPFLFNFLYRDLFTAMIIG  L V
Sbjct  1421608  TISFVYIVTAVVGVEAWYEPFLFNFLYRDLFTAMIIGKKLHV  1421733


 Score = 67.0 bits (162),  Expect = 8e-10, Method: Compositional matrix adjust.
 Identities = 54/74 (73%), Positives = 63/74 (85%), Gaps = 0/74 (0%)
 Frame = +2

Query  302      NSTCQLIVCQMSSTRCPTLNWllvplflvvlvvnlgvASYVESIllytlttaftlaHIHY  361
                N  CQLIVCQMSSTRCPTLNWLL+PLF +V+VVN+GV  YVESILL+ LT AFTLAH+HY
Sbjct  1431344  NFQCQLIVCQMSSTRCPTLNWLLLPLFAIVMVVNVGVTPYVESILLFALTAAFTLAHVHY  1431523

Query  362      GVRVVKQLSSHFQI  375
                GVRVV +L  ++ I
Sbjct  1431524  GVRVVSKLGQNWVI  1431565


 Score = 60.8 bits (146),  Expect = 7e-08, Method: Compositional matrix adjust.
 Identities = 28/32 (88%), Positives = 30/32 (94%), Gaps = 0/32 (0%)
 Frame = +2

Query  366      VKQLSSHFQIYPFSLRKPNSDXLGMEEKNIGL  397
                VKQLS+HF IYPFSLRKPNSD LG+EEKNIGL
Sbjct  1433567  VKQLSNHFHIYPFSLRKPNSD*LGVEEKNIGL  1433662


 Score = 59.7 bits (143),  Expect = 2e-07, Method: Compositional matrix adjust.
 Identities = 30/48 (63%), Positives = 35/48 (73%), Gaps = 4/48 (8%)
 Frame = +3

Query  76       YASAPGHKHVPDWVWIVVGILNFVAYTLDGVDGKQARRTNSSTPLGEL  123
                + SAPGHKHVPDWVWIVVGILNF+AYTL    GK+    + S  L +L
Sbjct  1416312  FLSAPGHKHVPDWVWIVVGILNFMAYTL----GKKLANIHCSQWLAKL  1416443


 Score = 53.1 bits (126),  Expect = 2e-05, Method: Compositional matrix adjust.
 Identities = 23/25 (92%), Positives = 25/25 (100%), Gaps = 0/25 (0%)
 Frame = +2

Query  19       KYSAVDTNPLSLYVMHPFWNTIVKV  43
                +YSAVDTNPLSLYVMHPFWNT+VKV
Sbjct  1413446  QYSAVDTNPLSLYVMHPFWNTVVKV  1413520


 Score = 50.8 bits (120),  Expect = 1e-04, Method: Compositional matrix adjust.
 Identities = 35/37 (95%), Positives = 36/37 (97%), Gaps = 0/37 (0%)
 Frame = +3

Query  43       VFPTWLAPNLITFSGFLLVVFNFLLMAYFDPDFYASA  79
                VFPTWLAPNLITFSGFLLVVFNFLL+AYFDPDFYAS 
Sbjct  1413969  VFPTWLAPNLITFSGFLLVVFNFLLLAYFDPDFYASG  1414079


 Score = 48.1 bits (113),  Expect = 7e-04, Method: Compositional matrix adjust.
 Identities = 22/32 (69%), Positives = 24/32 (75%), Gaps = 0/32 (0%)
 Frame = +2

Query  1        MAGYEYVSPEQLAGFDKYKYSAVDTNPLSLYV  32
                MA YEYVSPEQLAGFDKYK +     PL+L V
Sbjct  1395968  MASYEYVSPEQLAGFDKYKVARAPRTPLALLV  1396063


 Score = 38.9 bits (89),  Expect = 0.47, Method: Compositional matrix adjust.
 Identities = 17/17 (100%), Positives = 17/17 (100%), Gaps = 0/17 (0%)
 Frame = +3

Query  228      GCALCVTLPMSLLNFFR  244
                GCALCVTLPMSLLNFFR
Sbjct  1427919  GCALCVTLPMSLLNFFR  1427969


> NIVO01009358.1 Ammotragus lervia isolate NAZ scaffold14667_len282004_cov72, 
whole genome shotgun sequence
Length=280098

 Score = 67.0 bits (162),  Expect = 8e-10, Method: Compositional matrix adjust.
 Identities = 29/50 (58%), Positives = 34/50 (68%), Gaps = 0/50 (0%)
 Frame = +3

Query  83     KHVPDWVWIVVGILNFVAYTLDGVDGKQARRTNSSTPLGELFDHGLDSWS  132
                 P W +I      F+  +LD +DGKQARRTNSS+PLGELFDHG DS S
Sbjct  93456  SQAPLWAYIACACGLFIYQSLDAIDGKQARRTNSSSPLGELFDHGCDSLS  93605


 Score = 40.4 bits (93),  Expect = 0.16, Method: Compositional matrix adjust.
 Identities = 20/75 (27%), Positives = 38/75 (51%), Gaps = 1/75 (1%)
 Frame = +3

Query  7      VSPEQLAGFDKYKYSAVDTNPLSLYVMHPFWNTIVKVFPTWLAPNLITFSGFLLVVFNFL  66
              +S  QL   ++++Y +   + L   +M  +W  +V   P+W+APNLIT  G  + +   +
Sbjct  88035  LSRHQLKRLEEHRYQSAGRSLLE-PLMQGYWEWLVGRVPSWIAPNLITIIGLSINICTTV  88211

Query  67     LMAYFDPDFYASAPG  81
              L+ ++ P       G
Sbjct  88212  LLVFYCPTATEQVRG  88256


> NIVO01046283.1 Ammotragus lervia isolate NAZ scaffold2786_len657371_cov71, 
whole genome shotgun sequence
Length=657136

 Score = 64.3 bits (155),  Expect = 6e-09, Method: Compositional matrix adjust.
 Identities = 27/48 (56%), Positives = 35/48 (73%), Gaps = 0/48 (0%)
 Frame = +1

Query  85      VPDWVWIVVGILNFVAYTLDGVDGKQARRTNSSTPLGELFDHGLDSWS  132
                P W +++  +  F+  +LD +DGKQARRTNS +PLGELFDHG DS S
Sbjct  511159  APYWTYLLCALGLFIYQSLDAIDGKQARRTNSCSPLGELFDHGCDSLS  511302


 Score = 34.7 bits (78),  Expect = 9.8, Method: Compositional matrix adjust.
 Identities = 21/73 (29%), Positives = 37/73 (51%), Gaps = 9/73 (12%)
 Frame = +3

Query  5       EYVSPEQLAGFDKYKYSAVDTN----PLSLYVMHPFWNTIVKVFPTWLAPNLITFSGFLL  60
               E +S  QL   ++++Y+A   +    PL LY     W  +++  P W+APN IT  G  +
Sbjct  499707  EPLSAAQLRRLEEHRYTAAGVSLLEPPLQLY-----WTWLLQWIPLWMAPNSITLLGLAI  499871

Query  61      VVFNFLLMAYFDP  73
                +   L++  + P
Sbjct  499872  NMLTTLVLISYCP  499910



Lambda      K        H        a         alpha
   0.327    0.141    0.463    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 230558792376


  Database: /cursos/20428/BI/genomes/2017/Ammotragus_lervia/genome.fa
    Posted date:  Nov 13, 2017  9:29 AM
  Number of letters in database: 2,650,836,958
  Number of sequences in database:  77,320



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 13
Window for multiple hits: 40
