TBLASTN 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.



Database: /cursos/20428/BI/genomes/2017/Ammotragus_lervia/genome.fa
           77,320 sequences; 2,650,836,958 total letters



Query= SPP00000254_2.0 # Protein # Selenocysteine synthase (SecS) # Cow

Length=503
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  NIVO01007502.1 Ammotragus lervia isolate NAZ scaffold1331_len22...    195   1e-50


> NIVO01007502.1 Ammotragus lervia isolate NAZ scaffold1331_len2273840_cov70, 
whole genome shotgun sequence
Length=2272734

 Score =   195 bits (496),  Expect = 1e-50, Method: Compositional matrix adjust.
 Identities = 92/100 (92%), Positives = 97/100 (97%), Gaps = 0/100 (0%)
 Frame = -3

Query  404      RVVPLGSMQTVSGYTFRGFMSHTNNYPCAYLNAASAIGMKTQDVDLFIKRLDKCLKTVRK  463
                RVVPLGSMQTVSGYTFRGFMSH+NNYPCAYLNAASAIGMKTQDVDLF+KRLDKCLKTVRK
Sbjct  1678786  RVVPLGSMQTVSGYTFRGFMSHSNNYPCAYLNAASAIGMKTQDVDLFVKRLDKCLKTVRK  1678607

Query  464      EQNKESDISGVDNNDKTEDVDIEEMALKLDNVCLDTCQDS  503
                EQNKESD+S VDNNDKTEDV+IEE+ALKLD V LDTCQDS
Sbjct  1678606  EQNKESDVSEVDNNDKTEDVNIEEVALKLDTVRLDTCQDS  1678487


 Score = 94.4 bits (233),  Expect(2) = 2e-30, Method: Compositional matrix adjust.
 Identities = 43/45 (96%), Positives = 45/45 (100%), Gaps = 0/45 (0%)
 Frame = -3

Query  269      GARVGRIDAFVQSLDKNFMVPVGGAIIAGFNDSFIQEISKMYPGR  313
                GARVGR+DAFVQSLDKNFMVPVGGAIIAGFNDSFIQEISKMYPG+
Sbjct  1694305  GARVGRVDAFVQSLDKNFMVPVGGAIIAGFNDSFIQEISKMYPGK  1694171


 Score = 63.5 bits (153),  Expect(2) = 2e-30, Method: Compositional matrix adjust.
 Identities = 32/34 (94%), Positives = 32/34 (94%), Gaps = 0/34 (0%)
 Frame = -2

Query  312      GRASASPSLDVLITLLSLGSNGYKKLLKERKEMF  345
                GRASASPSLDVLITLLSLGSNGYKKLLKERK  F
Sbjct  1694051  GRASASPSLDVLITLLSLGSNGYKKLLKERKVRF  1693950


 Score =   120 bits (300),  Expect = 2e-26, Method: Compositional matrix adjust.
 Identities = 57/73 (78%), Positives = 61/73 (84%), Gaps = 3/73 (4%)
 Frame = -1

Query  129      AGVHTVTSCFVVPMATGMSLTLCFLTLRHRRPKAKYIIWPRIDQKSCFKSMITAGFE---  185
                 GVHTVTSCFVVPMATGMSLTLCFLTLRHRRPKAKYIIWPRIDQKSCFKSMITAG +   
Sbjct  1709430  VGVHTVTSCFVVPMATGMSLTLCFLTLRHRRPKAKYIIWPRIDQKSCFKSMITAGKKKRN  1709251

Query  186      PVVIENILEGDEL  198
                 + + NI E   +
Sbjct  1709250  SIYVLNITENSNI  1709212


 Score =   119 bits (298),  Expect = 3e-26, Method: Compositional matrix adjust.
 Identities = 53/55 (96%), Positives = 55/55 (100%), Gaps = 0/55 (0%)
 Frame = -3

Query  38       KGKCPEDGWDESTLELFLHELAIMDSNNFLGNCGVGEREGRVASALVARRHYRFI  92
                KGKCPEDGWDESTLELFLHELAIMDSNNFLGNCGVGEREGRVASALVARRHYR++
Sbjct  1711747  KGKCPEDGWDESTLELFLHELAIMDSNNFLGNCGVGEREGRVASALVARRHYRYV  1711583


 Score =   109 bits (273),  Expect = 5e-23, Method: Compositional matrix adjust.
 Identities = 51/52 (98%), Positives = 52/52 (100%), Gaps = 0/52 (0%)
 Frame = -3

Query  183      GFEPVVIENILEGDELRTDLKAVEAKVQELGPDHVLCVHSTTSCFAPRVPDR  234
                GFEPVVIENILEGDELRTDL+AVEAKVQELGPDHVLCVHSTTSCFAPRVPDR
Sbjct  1706797  GFEPVVIENILEGDELRTDLEAVEAKVQELGPDHVLCVHSTTSCFAPRVPDR  1706642


 Score = 86.3 bits (212),  Expect = 2e-15, Method: Compositional matrix adjust.
 Identities = 44/52 (85%), Positives = 47/52 (90%), Gaps = 0/52 (0%)
 Frame = -1

Query  83       LVARRHYRFIHGIGRSGDISAVQPKAAGSSLLNKITNSLVLDIIKLAGVHTV  134
                L+A    RFIHGIGRSGDISAVQPKAAGSSLLNKITNSLVLDIIKLAG++ V
Sbjct  1709880  LLAHFLLRFIHGIGRSGDISAVQPKAAGSSLLNKITNSLVLDIIKLAGMYCV  1709725


 Score = 81.3 bits (199),  Expect = 5e-14, Method: Compositional matrix adjust.
 Identities = 37/38 (97%), Positives = 37/38 (97%), Gaps = 0/38 (0%)
 Frame = -1

Query  1        MNREFFAAGERLVSPAYVRQGCEARRSHEHLMRLLLEK  38
                MNRE FAAGERLVSPAYVRQGCEARRSHEHLMRLLLEK
Sbjct  1713228  MNRELFAAGERLVSPAYVRQGCEARRSHEHLMRLLLEK  1713115


 Score = 78.2 bits (191),  Expect = 4e-13, Method: Compositional matrix adjust.
 Identities = 35/35 (100%), Positives = 35/35 (100%), Gaps = 0/35 (0%)
 Frame = -1

Query  234      RLEELAVICANYGIPHIVNNAYGVQSSKCMHLIQQ  268
                RLEELAVICANYGIPHIVNNAYGVQSSKCMHLIQQ
Sbjct  1702593  RLEELAVICANYGIPHIVNNAYGVQSSKCMHLIQQ  1702489


 Score = 67.8 bits (164),  Expect = 7e-10, Method: Compositional matrix adjust.
 Identities = 35/65 (54%), Positives = 45/65 (69%), Gaps = 1/65 (2%)
 Frame = -1

Query  342      KEMFSYLSNQLKKLSEAYNERLLHTPHNPISLAMTLRTLDKHCSRAVTQLGSMLFTRQVS  401
                +EMFSYLSNQLKKLSEAY+ERLLHTPHNPISL     +  KH        G ++F ++V 
Sbjct  1682034  QEMFSYLSNQLKKLSEAYSERLLHTPHNPISLG-NFFSFLKH*YF*TISSGKLVFLKRVM  1681858

Query  402      GARVV  406
                 + ++
Sbjct  1681857  NSSLL  1681843


 Score = 63.2 bits (152),  Expect = 2e-08, Method: Compositional matrix adjust.
 Identities = 29/31 (94%), Positives = 31/31 (100%), Gaps = 0/31 (0%)
 Frame = -3

Query  374      AMTLRTLDKHCSRAVTQLGSMLFTRQVSGAR  404
                AMTL+TLDKHCS+AVTQLGSMLFTRQVSGAR
Sbjct  1680202  AMTLKTLDKHCSKAVTQLGSMLFTRQVSGAR  1680110



Lambda      K        H        a         alpha
   0.321    0.135    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 321328075792


  Database: /cursos/20428/BI/genomes/2017/Ammotragus_lervia/genome.fa
    Posted date:  Nov 13, 2017  9:29 AM
  Number of letters in database: 2,650,836,958
  Number of sequences in database:  77,320



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 13
Window for multiple hits: 40
