TBLASTN 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.



Database: /cursos/20428/BI/genomes/2017/Ammotragus_lervia/genome.fa
           77,320 sequences; 2,650,836,958 total letters



Query= SPP00000037_1.0 # Protein # SECIS binding protein 2 (SBP2) # Homo
sapiens # Complete

Length=854
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  NIVO01049792.1 Ammotragus lervia isolate NAZ scaffold1588_len23...    129   4e-28
  NIVO01028971.1 Ammotragus lervia isolate NAZ scaffold3053_len21...    108   6e-22


> NIVO01049792.1 Ammotragus lervia isolate NAZ scaffold1588_len2316217_cov71, 
whole genome shotgun sequence
Length=2315156

 Score =   129 bits (323),  Expect = 4e-28, Method: Compositional matrix adjust.
 Identities = 71/74 (96%), Positives = 73/74 (99%), Gaps = 0/74 (0%)
 Frame = +2

Query  632      YCSQMLSKEVDACVTDLLKELVRFQDRMYQKDPVKAKTKRRLVLGLREVlkhlklkklkC  691
                YCSQMLSKEVDACVTDLLKELVRFQDRMYQKDPVKAK KRRLVLGLREVLKHLKL+KLKC
Sbjct  1627400  YCSQMLSKEVDACVTDLLKELVRFQDRMYQKDPVKAKAKRRLVLGLREVLKHLKLRKLKC  1627579

Query  692      VIISPNCEKIQSKG  705
                +IISPNCEKIQSKG
Sbjct  1627580  IIISPNCEKIQSKG  1627621


 Score =   124 bits (311),  Expect = 1e-26, Method: Compositional matrix adjust.
 Identities = 60/87 (69%), Positives = 69/87 (79%), Gaps = 0/87 (0%)
 Frame = +3

Query  57       PPVTEQKIYTEDMAFGASTFPPQYLSSEITLHPYAYSPYTLDSTQNVYSVPGSQYLYNQP  116
                P +  QK+YT+DMAFGAS FP QY S+EI LHPYAYSPYTL S QNV  VPGS Y  NQP
Sbjct  1605261  PFLFRQKLYTDDMAFGASAFPSQYFSAEIPLHPYAYSPYTLQSPQNVCPVPGSPYDDNQP  1605440

Query  117      SCYRGFQTVKHRNENTCPLPQEMKALF  143
                SC+ GFQ VK R+E+TCPLPQ+ KA+F
Sbjct  1605441  SCFGGFQRVKPRSEHTCPLPQDTKAVF  1605521


 Score =   117 bits (292),  Expect = 2e-24, Method: Compositional matrix adjust.
 Identities = 61/95 (64%), Positives = 75/95 (79%), Gaps = 3/95 (3%)
 Frame = +1

Query  176      RGSHHLSIYAE--NSLKSDGYHKRTDRKSRIIAKNVSTSKPEFEFTTLDFPELQGAENN-  232
                R S++L I+    NS+ +DGY+KRTDRKSRII K+ S SKPEF FT LDFPELQ  EN+ 
Sbjct  1607008  RSSNNL*IFTLTFNSVNADGYYKRTDRKSRIIEKSGSASKPEFGFTRLDFPELQSPENSE  1607187

Query  233      MSEIQKQPKWGPVHSVSTDISLLREVVKPAAVLSK  267
                + +IQKQPKWGP+HS STDISLLRE+  P+A LS+
Sbjct  1607188  IPKIQKQPKWGPLHSTSTDISLLREMGTPSAGLSE  1607292


 Score =   113 bits (283),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 53/62 (85%), Positives = 55/62 (89%), Gaps = 0/62 (0%)
 Frame = +2

Query  695      SPNCEKIQSKGGLDDTLHTIIDYACEQNIPFVFALNRKALGRSLNKAVPVSVVGIFSYDG  754
                SP    +   GGLDDTLHTIIDYAC+QNIPFVFALNRKALGRSLNKAVPVSVVGIFSYDG
Sbjct  1634321  SPVIFLVLRAGGLDDTLHTIIDYACDQNIPFVFALNRKALGRSLNKAVPVSVVGIFSYDG  1634500

Query  755      AQ  756
                AQ
Sbjct  1634501  AQ  1634506


 Score =   111 bits (277),  Expect = 1e-22, Method: Compositional matrix adjust.
 Identities = 55/70 (79%), Positives = 61/70 (87%), Gaps = 1/70 (1%)
 Frame = +3

Query  294      ELSWTPMGYVVRQTLSTELSAAPKNVTSMINLKTIASSADPKNVSIPSSEALSSDPSYNK  353
                ELSWTPMGYVVRQTLSTELS APKNVTSMINLK +AS ADPKN S+PSSE LS +P Y K
Sbjct  1612011  ELSWTPMGYVVRQTLSTELSPAPKNVTSMINLKMVASPADPKNASMPSSEVLSLEPPY-K  1612187

Query  354      EKHIIHPTQK  363
                EKH++H T+K
Sbjct  1612188  EKHVVHLTEK  1612217


 Score = 92.4 bits (228),  Expect = 7e-17, Method: Compositional matrix adjust.
 Identities = 46/69 (67%), Positives = 52/69 (75%), Gaps = 0/69 (0%)
 Frame = +3

Query  756      QDQFHKMVELTVAARQAYKTMLENVQQELVGEPRPQAPPSLPTQGPSCPAEDGPPALKEK  815
                +DQFHKMVELT+AARQAY+TMLEN +QE +GE  P AP S P+QGPSCPAED P      
Sbjct  1634823  KDQFHKMVELTMAARQAYRTMLENTRQEPLGELGPCAPASPPSQGPSCPAEDRPLVPAGT  1635002

Query  816      EEPHYIEIW  824
                EEP Y E W
Sbjct  1635003  EEPRYSECW  1635029


 Score = 73.9 bits (180),  Expect = 3e-11, Method: Compositional matrix adjust.
 Identities = 32/48 (67%), Positives = 43/48 (90%), Gaps = 0/48 (0%)
 Frame = +2

Query  488      ECASGERGRRMSQMKTPHNPLDSSAPLMKKGKQREIPKAKKPTSLKKI  535
                +  SG++G R++Q+KTPHNPLDS++P+ KKGKQRE+PKAKKPT LKK+
Sbjct  1624676  DSMSGKKGHRLAQVKTPHNPLDSTSPMTKKGKQREVPKAKKPTPLKKV  1624819


 Score = 73.2 bits (178),  Expect = 5e-11, Method: Compositional matrix adjust.
 Identities = 42/61 (69%), Positives = 45/61 (74%), Gaps = 3/61 (5%)
 Frame = +3

Query  6        PREPESEGIKLSADVKPFVPRFAGLNVAWLESSEACVFPSSAAT-YYPFVQEPPVTEQKI  64
                P  P+S  IKLSADVKPFVP+FAGLNV W ESSEA VFPS AAT YYP VQE  V E   
Sbjct  1600389  PFSPQS--IKLSADVKPFVPKFAGLNVGWSESSEARVFPSCAATSYYPCVQELAVPEYVF  1600562

Query  65       Y  65
                +
Sbjct  1600563  F  1600565


 Score = 62.4 bits (150),  Expect = 9e-08, Method: Compositional matrix adjust.
 Identities = 29/34 (85%), Positives = 32/34 (94%), Gaps = 0/34 (0%)
 Frame = +2

Query  405      DAEEFPNLAVASERRDRIETPKFQSKQQPQDNFK  438
                DAEEFPNLAVASERRDR+E+PKFQSKQQPQ  F+
Sbjct  1616303  DAEEFPNLAVASERRDRVESPKFQSKQQPQVIFR  1616404


 Score = 62.4 bits (150),  Expect = 1e-07, Method: Compositional matrix adjust.
 Identities = 36/52 (69%), Positives = 39/52 (75%), Gaps = 3/52 (6%)
 Frame = +1

Query  534      KIILKERQERKQ-RLQENAVSPAFTSDDTQD--GESGGDDQFPEQAELSGPE  582
                KIILKERQERKQ RLQENA+SPAF SDD QD   ESGGDDQ     ++ G E
Sbjct  1625518  KIILKERQERKQQRLQENALSPAFPSDDVQDVRDESGGDDQLLRPPDVLGIE  1625673


 Score = 54.7 bits (130),  Expect = 2e-05, Method: Compositional matrix adjust.
 Identities = 27/33 (82%), Positives = 31/33 (94%), Gaps = 0/33 (0%)
 Frame = +3

Query  438      KNNVKKSQLPVQLDLGGMLTALEKKQHSQHAKQ  470
                K++ KKSQ+PVQLDLGGMLTALEKKQHS +AKQ
Sbjct  1617678  KSSRKKSQIPVQLDLGGMLTALEKKQHSPNAKQ  1617776


 Score = 48.5 bits (114),  Expect = 0.002, Method: Compositional matrix adjust.
 Identities = 22/36 (61%), Positives = 31/36 (86%), Gaps = 0/36 (0%)
 Frame = +3

Query  156      QQKFDSERADGTISSEIKSARGSHHLSIYAENSLKS  191
                +QKFDS++ DG +SS++KS +GS  +SI+AENSLKS
Sbjct  1605756  EQKFDSKKTDGPVSSDLKSVKGSPRVSIHAENSLKS  1605863


 Score = 43.1 bits (100),  Expect = 0.063, Method: Compositional matrix adjust.
 Identities = 37/41 (90%), Positives = 37/41 (90%), Gaps = 0/41 (0%)
 Frame = +1

Query  364      SKASQGSDLEQNEAsrknkkkkekstskYEVLTVQEPPRIE  404
                SKASQG   EQNEASRKNKKKKEKS SKYEVLTVQEPPRIE
Sbjct  1614874  SKASQGGSPEQNEASRKNKKKKEKSKSKYEVLTVQEPPRIE  1614996


 Score = 42.7 bits (99),  Expect = 0.10, Method: Compositional matrix adjust.
 Identities = 26/52 (50%), Positives = 30/52 (58%), Gaps = 10/52 (19%)
 Frame = +1

Query  581      PEGMDELIST-PSVEDKSEEPPGTELQRDTEASHLAPNHTTFPKIHSRRFRD  631
                P  M E +S  P  E KSEE PG E Q++TEA          PKIHSRRFR+
Sbjct  1626631  PGEMKESVSCVPVAESKSEEQPGAEPQKETEAC---------PKIHSRRFRE  1626759


 Score = 37.0 bits (84),  Expect = 4.6, Method: Compositional matrix adjust.
 Identities = 26/34 (76%), Positives = 31/34 (91%), Gaps = 0/34 (0%)
 Frame = +1

Query  821      IEIWKKHLEAYSGCtleleesleastsQMMNLNL  854
                +++W+ H+EAYS C LELEESLEASTSQMMNLNL
Sbjct  1635682  VQVWRNHVEAYSRCALELEESLEASTSQMMNLNL  1635783


> NIVO01028971.1 Ammotragus lervia isolate NAZ scaffold3053_len2195064_cov71, 
whole genome shotgun sequence
Length=2207962

 Score =   108 bits (271),  Expect = 6e-22, Method: Compositional matrix adjust.
 Identities = 56/74 (76%), Positives = 67/74 (91%), Gaps = 0/74 (0%)
 Frame = +3

Query  632     YCSQMLSKEVDACVTDLLKELVRFQDRMYQKDPVKAKTKRRLVLGLREVlkhlklkklkC  691
               YC+Q+L KE+D CVT LL+ELV FQ+R+YQKDPV+AK +RRLV+GLREV KH+KL K+KC
Sbjct  898434  YCNQVLCKEIDECVTLLLQELVSFQERIYQKDPVRAKARRRLVMGLREVTKHMKLNKIKC  898613

Query  692     VIISPNCEKIQSKG  705
               VIISPNCEKIQSKG
Sbjct  898614  VIISPNCEKIQSKG  898655


 Score = 78.2 bits (191),  Expect = 2e-12, Method: Compositional matrix adjust.
 Identities = 36/61 (59%), Positives = 44/61 (72%), Gaps = 0/61 (0%)
 Frame = +3

Query  701     IQSKGGLDDTLHTIIDYACEQNIPFVFALNRKALGRSLNKAVPVSVVGIFSYDGAQDQFH  760
               +   GGLD+ L+ +I  A EQ IPFVFAL RKALGR +NK VPVSVVGIF+Y GA+    
Sbjct  899592  LSVSGGLDEALYNVIAMAREQEIPFVFALGRKALGRCVNKLVPVSVVGIFNYFGAEVSLR  899771

Query  761     K  761
               +
Sbjct  899772  R  899774


 Score = 39.3 bits (90),  Expect = 1.0, Method: Compositional matrix adjust.
 Identities = 18/29 (62%), Positives = 23/29 (79%), Gaps = 0/29 (0%)
 Frame = +1

Query  442     KKSQLPVQLDLGGMLTALEKKQHSQHAKQ  470
               KK++ PVQLDLG ML ALEK+Q +  A+Q
Sbjct  890173  KKNKTPVQLDLGDMLAALEKQQQAMKARQ  890259



Lambda      K        H        a         alpha
   0.311    0.128    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 623170288566


  Database: /cursos/20428/BI/genomes/2017/Ammotragus_lervia/genome.fa
    Posted date:  Nov 13, 2017  9:29 AM
  Number of letters in database: 2,650,836,958
  Number of sequences in database:  77,320



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 13
Window for multiple hits: 40
