TBLASTN 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.



Database: /cursos/20428/BI/genomes/2017/Ammotragus_lervia/genome.fa
           77,320 sequences; 2,650,836,958 total letters



Query= SPP00000283_2.0 # Protein # Phosphoseryl-tRNA kinase  (PSTK) # Cow

Length=346
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  NIVO01034609.1 Ammotragus lervia isolate NAZ scaffold2588_len27...    170   8e-44


> NIVO01034609.1 Ammotragus lervia isolate NAZ scaffold2588_len2780343_cov72, 
whole genome shotgun sequence
Length=2775773

 Score =   170 bits (431),  Expect = 8e-44, Method: Compositional matrix adjust.
 Identities = 80/86 (93%), Positives = 84/86 (98%), Gaps = 0/86 (0%)
 Frame = -2

Query  73       PSQWKLFRQELLKFLEHFLLAVINGCQMSAPPSKTEAMWKDFITCLKDQDLISSAAVEAQ  132
                PSQWKL RQELLK+LEHFLLAVINGCQMSAP S+TEAMWKDFITCLKDQDLISSAAVEAQ
Sbjct  2482534  PSQWKLLRQELLKYLEHFLLAVINGCQMSAPASRTEAMWKDFITCLKDQDLISSAAVEAQ  2482355

Query  133      ALYPLTKTAVSRPLLLILDDNFYYQN  158
                +LYPLTKTAVSRPLLLILDDNFYYQ+
Sbjct  2482354  SLYPLTKTAVSRPLLLILDDNFYYQS  2482277


 Score =   144 bits (362),  Expect = 6e-35, Method: Compositional matrix adjust.
 Identities = 70/74 (95%), Positives = 70/74 (95%), Gaps = 0/74 (0%)
 Frame = -1

Query  1        MKMGEDVRGAHSERPQKLVLCVLCGLPAAGKSTFARALRHWLQQELGWAVGVVAYDDVMP  60
                MKMGEDVRGAHSE PQKLVLCVLCGLPAAGKSTFARALRH LQQELGWAVGVVAYDDVMP
Sbjct  2485067  MKMGEDVRGAHSEGPQKLVLCVLCGLPAAGKSTFARALRHQLQQELGWAVGVVAYDDVMP  2484888

Query  61       EAVLEKASASPLPS  74
                EAVLEKASA PL S
Sbjct  2484887  EAVLEKASARPLVS  2484846


 Score =   139 bits (351),  Expect = 2e-33, Method: Compositional matrix adjust.
 Identities = 65/78 (83%), Positives = 69/78 (88%), Gaps = 0/78 (0%)
 Frame = -1

Query  156      YQNSSGFCQLFLDCALETCLQRNAQRPRPLPAETIHQMGNKIEKPNPEKNAWEHHSLAVQ  215
                + +S GFCQLFLDCALETCLQRNAQRPRPLPAETIHQMG+KIEKPNPEKNAWEHHSLA+Q
Sbjct  2481833  FSDSLGFCQLFLDCALETCLQRNAQRPRPLPAETIHQMGSKIEKPNPEKNAWEHHSLAIQ  2481654

Query  216      SPACASEARLKLTDLLIT  233
                SPACASEAR      L T
Sbjct  2481653  SPACASEAR*PTQRCLFT  2481600


 Score = 95.1 bits (235),  Expect = 4e-19, Method: Compositional matrix adjust.
 Identities = 63/66 (95%), Positives = 65/66 (98%), Gaps = 0/66 (0%)
 Frame = -3

Query  281      DEQMFPYnlkllaeelnklkaefleDLRQGNKKYLCFQQTIDLADVISFFHYEKDNIVRK  340
                DEQM PYNLKLLAEELNKLKAEFLEDLRQG+KKYLCFQQTIDL+DVISFFHYEKDNIVRK
Sbjct  2471946  DEQMLPYNLKLLAEELNKLKAEFLEDLRQGDKKYLCFQQTIDLSDVISFFHYEKDNIVRK  2471767

Query  341      YFSKQH  346
                YFSKQH
Sbjct  2471766  YFSKQH  2471749


 Score = 61.2 bits (147),  Expect = 3e-08, Method: Compositional matrix adjust.
 Identities = 30/31 (97%), Positives = 30/31 (97%), Gaps = 0/31 (0%)
 Frame = -2

Query  250      ETDRLIGSTNILHQADQTLRRIVSQTMKEAK  280
                ETDRLI STNILHQADQTLRRIVSQTMKEAK
Sbjct  2475772  ETDRLICSTNILHQADQTLRRIVSQTMKEAK  2475680


 Score = 50.8 bits (120),  Expect = 7e-05, Method: Compositional matrix adjust.
 Identities = 24/30 (80%), Positives = 27/30 (90%), Gaps = 0/30 (0%)
 Frame = -2

Query  220      ASEARLKLTDLLITALENPIKHVEENLEQK  249
                 S  RLKLTDLLITALENP+K+VEENLE+K
Sbjct  2478367  TSSYRLKLTDLLITALENPVKYVEENLERK  2478278



Lambda      K        H        a         alpha
   0.320    0.133    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 187798930785


  Database: /cursos/20428/BI/genomes/2017/Ammotragus_lervia/genome.fa
    Posted date:  Nov 13, 2017  9:29 AM
  Number of letters in database: 2,650,836,958
  Number of sequences in database:  77,320



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 13
Window for multiple hits: 40
