TBLASTN 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.



Database: /cursos/20428/BI/genomes/2017/Ammotragus_lervia/genome.fa
           77,320 sequences; 2,650,836,958 total letters



Query= SPP00000003_1.0 # Protein # Iodothyronine deiodinase 3 (DI3) # Homo
sapiens # Complete

Length=278
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  NIVO01034600.1 Ammotragus lervia isolate NAZ scaffold37_len5366...    527   2e-168
  NIVO01066248.1 Ammotragus lervia isolate NAZ scaffold348_len680...    140   2e-34 
  NIVO01071179.1 Ammotragus lervia isolate NAZ scaffold350633_len...  69.3    4e-11 


> NIVO01034600.1 Ammotragus lervia isolate NAZ scaffold37_len5366835_cov71, 
whole genome shotgun sequence
Length=5351045

 Score =   527 bits (1358),  Expect = 2e-168, Method: Compositional matrix adjust.
 Identities = 252/266 (95%), Positives = 259/266 (97%), Gaps = 0/266 (0%)
 Frame = +3

Query  13       CAQTASCLVLFPRFLGTAFMLWLLDFLCIRKHFLGRRRRGQPEPEVELNSEGEEVPPDDP  72
                CAQTASCLVLFPRFLGTAFMLWLLDFLCIRKH LGRRRRGQPE EVELNS+GEEVPPDDP
Sbjct  4247712  CAQTASCLVLFPRFLGTAFMLWLLDFLCIRKHLLGRRRRGQPEIEVELNSDGEEVPPDDP  4247891

Query  73       PICVSDDNRLCTLASLKAVWHGQKLDFFKQAHEGGPAPNSEVVLPDGFQSQHILDYAQGN  132
                P+CVSDDNRLCTLASL+AVWHGQKLDFFKQAHEGGPAPNSEVVLPDGFQ+QHILDYA+GN
Sbjct  4247892  PVCVSDDNRLCTLASLRAVWHGQKLDFFKQAHEGGPAPNSEVVLPDGFQNQHILDYARGN  4248071

Query  133      RPLVLNFGSCTXPPFMARMSAFQRLVTKYQRDVDFLIIYIEEAHPSDGWVTTDSPYIIPQ  192
                RPLVLNFGSCT PPFMARMSAFQRLVTKYQRDVDFLIIYIEEAHPSDGWVTTDSPY IPQ
Sbjct  4248072  RPLVLNFGSCT*PPFMARMSAFQRLVTKYQRDVDFLIIYIEEAHPSDGWVTTDSPYSIPQ  4248251

Query  193      HRSLEDRVSAARVLQQGAPGCALVLDTMANSSSSAYGAYFERLYVIQSGTIMYQGGRGPD  252
                HRSLEDRVSAARVLQQGAP CALVLDTM NSSSSAYGAYFERLY+IQSGTIMYQGGRGPD
Sbjct  4248252  HRSLEDRVSAARVLQQGAPECALVLDTMTNSSSSAYGAYFERLYIIQSGTIMYQGGRGPD  4248431

Query  253      GYQVSELRTWLERYDEQLHGARPRRV  278
                GYQVSELRTWLERYDEQLHG +PRRV
Sbjct  4248432  GYQVSELRTWLERYDEQLHGPQPRRV  4248509


> NIVO01066248.1 Ammotragus lervia isolate NAZ scaffold348_len6808047_cov72, 
whole genome shotgun sequence
Length=6804481

 Score =   140 bits (352),  Expect = 2e-34, Method: Compositional matrix adjust.
 Identities = 81/192 (42%), Positives = 112/192 (58%), Gaps = 23/192 (12%)
 Frame = -3

Query  97       LDFFKQAHEGGPAPNSEVV---LPDGFQSQ--------------HILDYAQGNRPLVLNF  139
                L F  Q   G  APNS VV    P+G  +               H+LD+A   RPLV+NF
Sbjct  6723743  LVFHHQVKLGEDAPNSRVVPVSSPEGGDTSGNGAQEKTADGPECHLLDFASPERPLVVNF  6723564

Query  140      GSCTXPPFMARMSAFQRLVTKYQRDVDFLIIYIEEAHPSDGW-VTTDSP--YIIPQHRSL  196
                GS T PPF  ++ AF +LV ++    DFL++YI+EAHPSDGW V  DS   + + +HR+ 
Sbjct  6723563  GSAT*PPFTNQLPAFSKLVEEFSSVADFLLVYIDEAHPSDGWAVPGDSSLFFEVKKHRNQ  6723384

Query  197      EDRVSAARVLQQG---APGCALVLDTMANSSSSAYGAYFERLYVIQSGTIMYQGGRGPDG  253
                EDR +AA+ L +     P C +V D M N+++ AYG  FER+ ++Q   I Y GG+GP  
Sbjct  6723383  EDRCAAAQQLLERFSLPPQCRVVADRMDNNANVAYGVAFERVCIVQRQKIAYLGGKGPFF  6723204

Query  254      YQVSELRTWLER  265
                Y + E+R WLE+
Sbjct  6723203  YNLQEVRRWLEK  6723168


> NIVO01071179.1 Ammotragus lervia isolate NAZ scaffold350633_len810912_cov72, 
whole genome shotgun sequence
Length=809262

 Score = 69.3 bits (168),  Expect = 4e-11, Method: Compositional matrix adjust.
 Identities = 36/77 (47%), Positives = 50/77 (65%), Gaps = 4/77 (5%)
 Frame = -2

Query  178     SDGWVTTDSPYIIPQHRSLEDRVSAARVLQQGAPGCALVLDTMANSSSSAYGAYFERLYV  237
               +DGW   ++   I  HR+L+DR+ AA +L   +P C +V+DTM N SSS Y A  ERLYV
Sbjct  644543  TDGWAFKNN-VDIKNHRNLQDRLRAAHLLLDRSPQCPVVVDTMKNQSSSCYAALPERLYV  644367

Query  238     IQSGTIMYQ---GGRGP  251
               ++ G I+Y+    GRGP
Sbjct  644366  LREGRILYKVGTCGRGP  644316


 Score = 67.0 bits (162),  Expect = 2e-10, Method: Compositional matrix adjust.
 Identities = 30/51 (59%), Positives = 36/51 (71%), Gaps = 0/51 (0%)
 Frame = -1

Query  128     YAQGNRPLVLNFGSCTXPPFMARMSAFQRLVTKYQRDVDFLIIYIEEAHPS  178
               +  GNRPLVLNFGSCT P F+ +   F+RL+  +    DFLIIYIEEAH S
Sbjct  648741  FVLGNRPLVLNFGSCT*PSFIFKFDQFKRLIEDFGSVADFLIIYIEEAHAS  648589



Lambda      K        H        a         alpha
   0.322    0.139    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 130172067811


  Database: /cursos/20428/BI/genomes/2017/Ammotragus_lervia/genome.fa
    Posted date:  Nov 13, 2017  9:29 AM
  Number of letters in database: 2,650,836,958
  Number of sequences in database:  77,320



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 13
Window for multiple hits: 40
