TBLASTN 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.



Database: /cursos/20428/BI/genomes/2017/Ammotragus_lervia/genome.fa
           77,320 sequences; 2,650,836,958 total letters



Query= SPP00000001_1.0 # Protein # Iodothyronine deiodinase 1 (DI1) # Homo
sapiens # Complete

Length=249
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  NIVO01014569.1 Ammotragus lervia isolate NAZ scaffold2916_len73...    176   3e-47
  NIVO01034600.1 Ammotragus lervia isolate NAZ scaffold37_len5366...    158   5e-41
  NIVO01066248.1 Ammotragus lervia isolate NAZ scaffold348_len680...    135   6e-33
  NIVO01071179.1 Ammotragus lervia isolate NAZ scaffold350633_len...    128   1e-30
  NIVO01029157.1 Ammotragus lervia isolate NAZ scaffold679_len355...  36.2    1.4  
  NIVO01052116.1 Ammotragus lervia isolate NAZ scaffold2008_len16...  34.3    6.0  


> NIVO01014569.1 Ammotragus lervia isolate NAZ scaffold2916_len73417_cov72, 
whole genome shotgun sequence
Length=73281

 Score =   176 bits (447),  Expect = 3e-47, Method: Compositional matrix adjust.
 Identities = 96/114 (84%), Positives = 105/114 (92%), Gaps = 0/114 (0%)
 Frame = +1

Query  1      MGLPQPGLWLKRlwvllevavhvvvgkvllilFPDRVKRNILAMGEKTGMTRNPHFSHDN  60
              MGLP PGLWLKRLWVL +VA+HV +GKVLL LFP RVK+NILAMGEKTGMTRNPHFSH+N
Sbjct  62692  MGLPPPGLWLKRLWVLFQVALHVAIGKVLLTLFPRRVKKNILAMGEKTGMTRNPHFSHEN  62871

Query  61     WIPTFFSTQYFWFVLKVRWQRLEDTTELGGLAPNCPVVRLSGQRCNIWEFMQGN  114
              WIPTFFS QYFWF+LKVRWQRLED TE GGLAPNCPVVRLSG+RC+IW+FMQG 
Sbjct  62872  WIPTFFSAQYFWFILKVRWQRLEDMTEQGGLAPNCPVVRLSGERCSIWDFMQGQ  63033


> NIVO01034600.1 Ammotragus lervia isolate NAZ scaffold37_len5366835_cov71, 
whole genome shotgun sequence
Length=5351045

 Score =   158 bits (400),  Expect = 5e-41, Method: Compositional matrix adjust.
 Identities = 87/192 (45%), Positives = 116/192 (60%), Gaps = 5/192 (3%)
 Frame = +3

Query  57       SHDNWIPTFFSTQYFWFVLKVRWQRLEDTTELGGLAPNCPVVRLSG-QRCNIWEFMQGNR  115
                S DN + T  S +  W   K+ + +       GG APN  VV   G Q  +I ++ +GNR
Sbjct  4247904  SDDNRLCTLASLRAVWHGQKLDFFK---QAHEGGPAPNSEVVLPDGFQNQHILDYARGNR  4248074

Query  116      PLVLNFGSCTXPSFMFKFDQFKRLIEDFSSIADFLVIYIEEAHASDGWAFKNN-MDIRNH  174
                PLVLNFGSCT P FM +   F+RL+  +    DFL+IYIEEAH SDGW   ++   I  H
Sbjct  4248075  PLVLNFGSCT*PPFMARMSAFQRLVTKYQRDVDFLIIYIEEAHPSDGWVTTDSPYSIPQH  4248254

Query  175      QNLQDRLQAAHLLLARSPQCPVVVDTMQNQSSQLYAALPERLYIIQEGRILYKGKSGPWN  234
                ++L+DR+ AA +L   +P+C +V+DTM N SS  Y A  ERLYIIQ G I+Y+G  GP  
Sbjct  4248255  RSLEDRVSAARVLQQGAPECALVLDTMTNSSSSAYGAYFERLYIIQSGTIMYQGGRGPDG  4248434

Query  235      YNPEEVRAVLEK  246
                Y   E+R  LE+
Sbjct  4248435  YQVSELRTWLER  4248470


> NIVO01066248.1 Ammotragus lervia isolate NAZ scaffold348_len6808047_cov72, 
whole genome shotgun sequence
Length=6804481

 Score =   135 bits (339),  Expect = 6e-33, Method: Compositional matrix adjust.
 Identities = 77/186 (41%), Positives = 104/186 (56%), Gaps = 25/186 (13%)
 Frame = -3

Query  86       TELGGLAPNCPVVRLS------------------GQRCNIWEFMQGNRPLVLNFGSCTXP  127
                 +LG  APN  VV +S                  G  C++ +F    RPLV+NFGS T P
Sbjct  6723725  VKLGEDAPNSRVVPVSSPEGGDTSGNGAQEKTADGPECHLLDFASPERPLVVNFGSAT*P  6723546

Query  128      SFMFKFDQFKRLIEDFSSIADFLVIYIEEAHASDGWAFKNN----MDIRNHQNLQDRLQA  183
                 F  +   F +L+E+FSS+ADFL++YI+EAH SDGWA   +     +++ H+N +DR  A
Sbjct  6723545  PFTNQLPAFSKLVEEFSSVADFLLVYIDEAHPSDGWAVPGDSSLFFEVKKHRNQEDRCAA  6723366

Query  184      AHLLLAR---SPQCPVVVDTMQNQSSQLYAALPERLYIIQEGRILYKGKSGPWNYNPEEV  240
                A  LL R    PQC VV D M N ++  Y    ER+ I+Q  +I Y G  GP+ YN +EV
Sbjct  6723365  AQQLLERFSLPPQCRVVADRMDNNANVAYGVAFERVCIVQRQKIAYLGGKGPFFYNLQEV  6723186

Query  241      RAVLEK  246
                R  LEK
Sbjct  6723185  RRWLEK  6723168


> NIVO01071179.1 Ammotragus lervia isolate NAZ scaffold350633_len810912_cov72, 
whole genome shotgun sequence
Length=809262

 Score =   128 bits (322),  Expect = 1e-30, Method: Compositional matrix adjust.
 Identities = 61/87 (70%), Positives = 71/87 (82%), Gaps = 2/87 (2%)
 Frame = -2

Query  160     SDGWAFKNNMDIRNHQNLQDRLQAAHLLLARSPQCPVVVDTMQNQSSQLYAALPERLYII  219
               +DGWAFKNN+DI+NH+NLQDRL+AAHLLL RSPQCPVVVDTM+NQSS  YAALPERLY++
Sbjct  644543  TDGWAFKNNVDIKNHRNLQDRLRAAHLLLDRSPQCPVVVDTMKNQSSSCYAALPERLYVL  644364

Query  220     QEGRILYKGKSGPWNYNPEEVRAVLEK  246
               +EGRILY  K G     P E R   E+
Sbjct  644363  REGRILY--KVGTCGRGPREGRVRAER  644289


 Score = 96.7 bits (239),  Expect = 5e-20, Method: Compositional matrix adjust.
 Identities = 44/51 (86%), Positives = 48/51 (94%), Gaps = 0/51 (0%)
 Frame = -1

Query  110     FMQGNRPLVLNFGSCTXPSFMFKFDQFKRLIEDFSSIADFLVIYIEEAHAS  160
               F+ GNRPLVLNFGSCT PSF+FKFDQFKRLIEDF S+ADFL+IYIEEAHAS
Sbjct  648741  FVLGNRPLVLNFGSCT*PSFIFKFDQFKRLIEDFGSVADFLIIYIEEAHAS  648589


 Score = 49.3 bits (116),  Expect = 8e-05, Method: Compositional matrix adjust.
 Identities = 21/25 (84%), Positives = 23/25 (92%), Gaps = 0/25 (0%)
 Frame = -2

Query  225     LYKGKSGPWNYNPEEVRAVLEKLHS  249
               L +GK GPWNY+PEEVRAVLEKLHS
Sbjct  642119  LLQGKPGPWNYHPEEVRAVLEKLHS  642045


> NIVO01029157.1 Ammotragus lervia isolate NAZ scaffold679_len3555425_cov72, 
whole genome shotgun sequence
Length=3558729

 Score = 36.2 bits (82),  Expect = 1.4, Method: Compositional matrix adjust.
 Identities = 16/64 (25%), Positives = 33/64 (52%), Gaps = 1/64 (2%)
 Frame = -3

Query  71      FWFVLKVRWQRLEDTTELGGLAPNCPVVRLSGQRCNIWEFMQGNRPLVLNFGSCTXPSFM  130
               F+  +  RW  ++D  +   ++PNCPV  + GQ+ +    +Q    + + +  CT  +F 
Sbjct  148201  FY*RVSARWG-VKDEEQRLAISPNCPVEYILGQKTHAAALLQ*KETIYMQYFKCTIVNFE  148025

Query  131     FKFD  134
               +K+ 
Sbjct  148024  YKYQ  148013


> NIVO01052116.1 Ammotragus lervia isolate NAZ scaffold2008_len1672071_cov71, 
whole genome shotgun sequence
Length=1669013

 Score = 34.3 bits (77),  Expect = 6.0, Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 26/57 (46%), Gaps = 1/57 (2%)
 Frame = +2

Query  43      AMGEKTGMTRNPHFSHDNWIPTFFSTQYFWFVLKVRWQRLE-DTTELGGLAPNCPVV  98
               A+G+ TG   +PH S +NWI    ST   W    +  QRL     E  G  P C  +
Sbjct  339593  ALGQTTGRGHSPHPSAENWIKDVLSTAL*W*RTHLPMQRLSFSPLEGHGTPPQCSCL  339763



Lambda      K        H        a         alpha
   0.324    0.138    0.448    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 106602706838


  Database: /cursos/20428/BI/genomes/2017/Ammotragus_lervia/genome.fa
    Posted date:  Nov 13, 2017  9:29 AM
  Number of letters in database: 2,650,836,958
  Number of sequences in database:  77,320



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 13
Window for multiple hits: 40
