_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 6e-72
 Query name: gi|1016686572|ref|XP_016067141.1| PREDICTED: selenoprotein O, partial [Miniopterus natalensis]
 Query range: 1-536  (total 536)

 Target: /data/www-rg/seblastian_results/665009178/tempfiles/temptarget.fasta
 Chromosome: LDJU01000393.1:subseq_448135,24991_ Strand: -
 Positions:
 -Exon 1  19827        19991
 -Exon 2  12263        12447
 -Exon 3  10914        11094
 -Exon 4  9915         10045
 -Exon 5  9191         9471
 -Exon 6  6561         6711
 -Exon 7  5519         5704
 -Exon 8  5256         5412
 -Exon 9  5000         5170

 Redox box: YES

Query   AHCYCGHQFGQFAGQLGDGAAMYLGEVCTAAGERWELQLKGSGPTPFSRWAPPPG <---Intron---> VLRSSIREFLCSEAMFHLGVPTTRAGACV
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||| <   7379bp   > |||||||||||||||||||||||||||||
Target  AHCYCGHQFGQFAGQLGDGAAMYLGEVCTAAGERWELQLKGSGPTPFSRWAPPPG                VLRSSIREFLCSEAMFHLGVPTTRAGACV
        gctttgcctgctggccgggggatcgggtaggggctgcccagtgcacttatgcccg                gcctaacgtctaggatccggcaacgggtg
        cagaggaatgatcgatgagcctatgatgcccgaggatatagcgccctcggccccg                ttgcgtgattggacttatgtcccgcgcgt
        gccccccgccgcggggcccccgcgcggcggccgcggggcgccccgcccgggctat                ggcccccgcgccgcgccgcgccgcccccc
                                                                                                            

Query   TSQSTVVRDVFYDGNPKHEPCAVVLRIASTFLR <---Intron---> FGSFEIFKPEDEHTGRAGPSVGRNDIRVQMLDYVISTFYPEIQASHASDTV
        ||||||||||||||||||||||||||||||||| <   1168bp   > |||||||||||||||||||||||||||||||||||||||||||||||||||
Target  TSQSTVVRDVFYDGNPKHEPCAVVLRIASTFLR                FGSFEIFKPEDEHTGRAGPSVGRNDIRVQMLDYVISTFYPEIQASHASDTV
        atctaggcggttggacacgctgggccagtatca                tgttgatacgggcagcggcaggaagacgcacgtgaaattcgacgtcgagag
        ccaccttgattaagacaaacgctttgtcccttg                tgctattacaaaacggcgcgtggaatgtattaattgctacataccacgact
        gggcgcgccgccccccgcggccgggccgcccc                gcgctgctgtgtgcgctacccggatccaaaggctgccccctacactcccctg
                                                                                                            

Query   QRNAAFFRE <---Intron---> VTRRTARMVAEWQCVGFCHGVLNTDNMSIVGLTIDYGPFGFLDR <---Intron---> YDPDHVCNASDNAGR
        ||||||||| <   868bp    > |||||||||||||||||||||||||||||||||||||||||||| <   443bp    > |||||||||||||||
Target  QRNAAFFRE                VTRRTARMVAEWQCVGFCHGVLNTDNMSIVGLTIDYGPFGFLDR                YDPDHVCNASDNAGR
        caaggttcg                gaccagcagggtctggttcggcaagaaaaggcaagtgctgtcga                tgcgcgtagtgaggc
        agaccttga                tcggccgttcagagtgtgagttacaatgttgtctaagctgttag                aacaatgaccaacgg
        ggtcccccg                gatcgcgggtgggtccccccgccgccgctggcccccgctccgc                gcccccgctctcccgc
                                                                                                            

Query   YSFSKQPEVCKWNLQKLAEALVPELPLELGEAILAEEYDAEFHRHYLHKMRRKLGLVQAEREGDAALVAKLLETMQLTG <---Intron---> ADFTN
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| <   2479bp   > |||||
Target  YSFSKQPEVCKWNLQKLAEALVPELPLELGEAILAEEYDAEFHRHYLHKMRRKLGLVQAEREGDAALVAKLLETMQLTG                ADFTN
        tttaaccggtataccacgggcgcgcccgcgggacgggtgggtcactccaacaacgcgcggcgggggcggaccgaaccag                ggtaa
        actgaacatgagataatcacttcatctatgacttcaaaacatagaataatggatgttacagagaccttcattactatc                gcatca
        cgccggtgacggcggggcgcggcggccggcgccgcggcccgccgccgcggcggggtggcgggccaagacgcagcgggc                tcccac
                                                                                                            

Query   TFYLLSSFPVEPESPGLAEFLTALTEQCASLEELRLAFRPQMDPR <---Intron---> QLSMMLVLAQSNPQLFALIGTRASITKELERVEQQSRLE
        ||||||||||||||||||||||||||||||||||||||||||||| <   856bp    > |||||||||||||||||||||||||||||||||||||||
Target  TFYLLSSFPVEPESPGLAEFLTALTEQCASLEELRLAFRPQMDPR                QLSMMLVLAQSNPQLFALIGTRASITKELERVEQQSRLE
        attccattcggcgtcgcggtcagcagctgtcggcacgtcccagcc                cctaacgcgctaccctgcagacgaaaagcgcggcctccg
        ctattgctctacaccgtcattcctcaagcctaatgtctgcatacg                atctttttcacacattcttgcgcgtcaatagtaaacgta
        cccggcccaggggtacgcgcgcagtagtccgggggtccacggtc                ggccgggggagacagccactccggccaggggcgggggggg
                                                                                                            

Query   QLSPAELLSRNRGHWTDWLQEYR <---Intron---> TRLEEDRKGAADDSAWQAERTRVMQANNPKYVLRNYIAQNAIEAAENGDFSE <---Intr
        ||||||||||||||||||||||| <   106bp    > |||||||||||||||||||||||||||||||||||||||||||||||||||| <    85b
Target  QLSPAELLSRNRGHWTDWLQEYR                TRLEEDRKGAADDSAWQAERTRVMQANNPKYVLRNYIAQNAIEAAENGDFSE         
        ccacggccaaaagctagtccgta                aacgggaagggggagtcggcacgacgaacatgccatagcagaggggaggttg         
        atgccattggaggagcagtaaag                cgtaaagagccaagcgacagcgttacaacaattgaatcaactaccaagatca         
        ggcgcggacgcgtcgacgcggc                gcggggcggtctccccggtgcagcggccctatcggcccagcctgttgtaccag         
                                                                                                            

Query   on---> VQRVLKLLEAPYHREGEATEVPEATEPEGASRAADRRHSYSSKPPLWAAELCVTUSS
        p    > |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Target         VQRVLKLLEAPYHREGEATEVPEATEPEGASRAADRRHSYSSKPPLWAAELCVTUSS
               gccgcaccggctcaggggaggcggagcgggaagggaccttaaaccctgggctgattt
               tagttattaccaagagaccatcaccacagcggccaggacaggacctgccatgtcgcc
               ggcggggggtaccgaggccgcggctgtggccgaacgacccccgcgcgagagtggacg
                                                                     *  
 Sequence until next stop: 
TAA
 * 

 Distance CDS-SECIS: 93 ; UGA-SECIS: 99

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = LDJU01000393.1:subseq_448135,24991_ Strand = - Positions = 4906 - 4836
 Found by:  Infernal (score=20.3) Covels (score=25.36)
 Stem2 length = 10   Apical loop length = 18   Insertion in stem2 = 0, 0
 Free Energy = -13.47

         ..(((((((.......(((((((((((((((................)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcC-cuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         ..({({{((---....{[[{((((((((((..................))))))))))}]]}----..-.))}})})..
 target  CACCGUCUC---UCCAUGACGGCAGGGACGUCCAGUCAGGACCUGACCCGUCUCUGUCUGAC----GC-CGACUCAGCA
                         ****           ^^                         ****