_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 2e-31
 Query name: gi|1016676805|ref|XP_016063493.1| PREDICTED: methionine-R-sulfoxide reductase B1 [Miniopterus natalensis]
 Query range: 1-116  (total 116)

 Target: /data/www-rg/seblastian_results/423929676/tempfiles/temptarget.fasta
 Chromosome: LDJU01000322.1:subseq_610355,12861_ Strand: +
 Positions:
 -Exon 1  5000         5054
 -Exon 2  7267         7415
 -Exon 3  7721         7835
 -Exon 4  8768         8796

 Redox box: no

Query   MSFCSFFGGEVFQNHFDPG <---Intron---> VYVCAKCGYELFSSHSKYAHSSPWPAFTETIHADSVAKHPEHNRPEALK <---Intron---> 
        ||||||||||||||||||| <   2212bp   > ||||||||||||||||||||||||||||||||||||||||||||||||| <   305bp    > 
Target  MSFCSFFGGEVFQNHFDPG                VYVCAKCGYELFSSHSKYAHSSPWPAFTETIHADSVAKHPEHNRPEALK                
        atttattggggtcactgcg                gtgtgatgtgcttactatgcttctcgtagaacggaggaccgcaccggta                
        tctggttggattaaatac                gtatgcaggaattcgacaacacccgcctcactacagtcaacaaagcacta                
        ggcccccgcgtcgccttg                tccgtcgtccgcccccagtacgcagacctgtcttctgcgtagctctacag                
                                                                                                            

Query   VSCGKCGNGLGHEFLNDGPKKGQSRFUIFSSSLKFVPKG <---Intron---> KETSASQGK
        ||||||||||||||||||||||||||||||||||||||| <   932bp    > |||||||||
Target  VSCGKCGNGLGHEFLNDGPKKGQSRFUIFSSSLKFVPKG                KETSASQGK
        gttgatgagtgcgtcaggcaagctcttataatcatgcag                agatgtcga
        tcggaggagtgaattaagcaagacgtgttggctattca                gaaccccaga
        cctcgtccggctgcgctctggggaccaacccgggtcta                caattctggg
                                  *                                     
 Sequence until next stop: 
TAG
 * 

 Distance CDS-SECIS: 450 ; UGA-SECIS: 513

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = LDJU01000322.1:subseq_610355,12861_ Strand = + Positions = 9247 - 9319
 Found by:  Infernal (score=33.43) Covels (score=26.09)
 Stem2 length = 10   Apical loop length = 14   Insertion in stem2 = 0, 0
 Free Energy = -20.14

         ..(((((((.......(((((((((((((((...............)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         ..({{(((((--....([[{{((((((((((.....-.........))))))))))}}]])..--...)))))}})..
 target  CCUCAGUCAC--UGCAUGAUUCACUCUGGUUAAACC-CUUCCAGGCAGCCAGAGUGUUGAAGA--UCUGUGACCUGUG
                         ****           ^^^                       ****