_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 1e-39
 Query name: gi|982311636|ref|XP_015295790.1| PREDICTED: phospholipid hydroperoxide glutathione peroxidase, mitochondrial isoform X2 [Macaca fascicularis]
 Query range: 1-225  (total 226)

 Target: /data/www-rg/seblastian_results/24537560/tempfiles/temptarget.fasta
 Chromosome: LDJU01000355.1:subseq_90332,10396_ Strand: +
 Positions:
 -Exon 1  3010         3093
 -Exon 2  4834         4965
 -Exon 3  4985         5146
 -Exon 4  5277         5428
 -Exon 5  5531         5555
 -Exon 6  5740         5799
 -Exon 7  5876         5902

 Redox box: no

Query   MNLGRLCRLLKPALLCGALAAPGLAGTM <---Intron---> CASRDDWRCARSMHEFSAKDIDGHMVNLDKYRWALACGGAHGRG <---Intron-
        |/  || ||||| |/||||| ||/| || <   1740bp   > ||||||||||/||||||||||||||||||||||   |      | <    19bp  
Target  MSFSRLFRLLKPTLVCGALAGPGVASTM                CASRDDWRCAQSMHEFSAKDIDGHMVNLDKYRWVPTCQVGEAEG            
        aatacctcccacacgtggcggcgggaaa                tgtcggtctgctacgttgagaggcagacgatctgcatcgggggg            
        tgtggttgttaccttggctcgcgtcgct                gccgaagggcactaatccaatagattataaaggtccgatgacag            
        gccccgccgggtatgctttcgatgcccg                caccctgcttgcgcacacgcccgcgtcgcgcggatccggggagc            
                                                                                                            

Query   --> LGGGPALLRLTPADSCRGFVCIVTNVASQUGKTEVNYTQLVDLHARYAECGLRILAFPCNQFGKQ <---Intron---> EPGSNEEIKEFAAGY
          >            |    |||||||||||||||||/|||||||||||||||||||||||||||||/| <   130bp    > |||/| |||||||||
Target      -----------PHPISRGFVCIVTNVASQUGKTDVNYTQLVDLHARYAECGLRILAFPCNQFGRQ                EPGTNAEIKEFAAGY
            -----------cccatagtgtagaaggtctgaaggataccggccgctggtgtcacgtctactgac                gcgaaggaagtgggt
            -----------cactcggttgttcatccaggacataacattatacgacaggtgttctcgaatgga                acgcacataatccga
            -----------ctcccgccgcccccgcgaacaacacctgtccgccattgctagcgtctccgcggg                gagttcgcagtacct
                                         *                                                                  

Query   NVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGILGN <---Intron---> AIKWNFTK <---Intron---> FLIDKNGCVVKRYGPMEEPL <--
        ||||||/||||||||||||||||||/||||/||||| <   102bp    > |||||||| <   184bp    > |||||||||||||||||||| <  
Target  NVKFDMYSKICVNGDDAHPLWKWMKVQPKGRGILGN                AIKWNFTK                FLIDKNGCVVKRYGPMEEPL    
        agatgataaatgaggggccctataagccagagacga                gaatataa                tcagaagtggactgcaggcc    
        atatatagatgtagaacactgagtatacagggttga                ctagatca                tttaaaggttagagctaact    
        tcactgtcgctgcatccctggaggacgcgggacga                tccagcccg                cctcgtttggggttcgagcg    
                                                                                                            

Query   -Intron---> VIEKDLPHY
          76bp    > ||||||| |
Target              VIEKDLPCY
                    gagagcctt
                    ttaaatcga
                    caggcgccc
                             
 Sequence until next stop: 
CTTTAG
 L  * 

 Distance CDS-SECIS: 59 ; UGA-SECIS: 428

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = LDJU01000355.1:subseq_90332,10396_ Strand = + Positions = 5962 - 6034
 Found by:  Infernal (score=25.94) Covels (score=31.12)
 Stem2 length = 10   Apical loop length = 15   Insertion in stem2 = 0, 0
 Free Energy = -10.06

         ..(((((((.......(((((((((((((((...............)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         .({({(({((......([[{{(((((((([(...............)]))))))))}}]])----..-))}))})}).
 target  UUCCACCCGGCACCCAUGACAGUCUGUCUAAAAACCAGCCCGCUGGUGGGGCAGACCCGAG----AA-CCUGGCGUGC
                         ****           ^^^                       ****