________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 6e-27
 Query name: gi|1016638360|ref|XP_016069585.1| PREDICTED: glutathione peroxidase 3 [Miniopterus natalensis]
 Query range: 1-222  (total 222)

 Target: /data/www-rg/seblastian_results/61888677/tempfiles/temptarget.fasta
 Chromosome: LDJU01000117.1:subseq_4171525,12532_ Strand: -
 Positions:
 -Exon 1  7759         7798
 -Exon 2  7373         7561
 -Exon 3  6121         6238
 -Exon 4  5574         5673
 -Exon 5  4973         5191

 Redox box: no

Query   MPPPASVSSPSGPA <---Intron---> LTAAGAGLLLQTDCHSQVSGTIYDYGALTLNGEEYIPFKQYAGKYVLFVNVASYUGLTGQYVE <---In
        |||||||||||||| <   197bp    > ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| <   11
Target  MPPPASVSSPSGPA                LTAAGAGLLLQTDCHSQVSGTIYDYGALTLNGEEYIPFKQYAGKYVLFVNVASYUGLTGQYVE       
        acccgtgttctgcg                cagggggcctcagtctcgagaatgtggcacagggtactactggatgctgaggattgcagctgg       
        tccccctccccgc                ctcccgcgtttacagacatggctaaagctctagaaatctaaacgaattttatcgaggtcgaat        
        gaggaaggttagt                tacccctttggggcctcagtccccctacccccgggccccggttcaccctccgcccacggcgct        
                                                                                            *               

Query   tron---> LNALQEELEPFGLVILGFPCNQFGKQEPGQNSEILPSLK <---Intron---> YVRPGGGFVPNFQLFEKGDVNGENEQKVYTFLK <-
        34bp   > ||||||||||||||||||||||||||||||||||||||| <   447bp    > ||||||||||||||||||||||||||||||||| < 
Target           LNALQEELEPFGLVILGFPCNQFGKQEPGQNSEILPSLK                YVRPGGGFVPNFQLFEKGDVNGENEQKVYTFLK   
                 cagccggcgctgcgacgtctactgacgcgcatgacctca                tgccgggtgcatcctgagggaggagcagtatca   
                atactaaatactgttttgtcgaatgaaacgaacattccta                atgcgggttcatattaagatagaaaaatactta   
                agtaagaggaattgctgcccccacaaggaagcggcatcc                gtaagggcccctcgctgaatgtggtaagccgcgg   
                                                                                                            

Query   --Intron---> NSCPPTSELLGSPNRLFWEPMKVHDIRWNFEKFLVGPDGKPIMRWYHRTTVSNVKVDILAYMRQQEALAAARK
          382bp    > |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Target               NSCPPTSELLGSPNRLFWEPMKVHDIRWNFEKFLVGPDGKPIMRWYHRTTVSNVKVDILAYMRQQEALAAARK
                     attccatgccgtcaccttgcaagcgactatgatcggcggacaacttccaagaagaggacgtaaccggcgggaa
                     acgccccattgccagttgactataatggataatttgcagacttggaagcctgatatattcatgaaactcccga
                     ccttccggcgcgtccccgatggctcccgctggcgggatcaccgcgccgcaccccggccgccggggacggccgg
                                                                                              
 Sequence until next stop: 
TAA
 * 

 Distance CDS-SECIS: 634 ; UGA-SECIS: 1093

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = LDJU01000117.1:subseq_4171525,12532_ Strand = - Positions = 4338 - 4263
 Found by:  Infernal (score=23.06) Covels (score=29.67)
 Stem2 length = 9   Apical loop length = 13   Insertion in stem2 = 0, 0
 Free Energy = -14.98

         ..(((((((.......(((((((((((((((...............)))))))))))))))...........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuu--u-uuucaugaccggc
         ...(((({(.--....([[((({(((({(((.....--........)))}))))})))]]).......-...)}))))...
 target  GAGUGGCGUC--UCCAUGAAGGAGGGGCCCGAAGCC--CUAGUGGGCGGACCUCCCCUGAGCCUGUCU-GAAGGGCCAGCC
                         ****           ^^                        ****