_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 8e-78
 Query name: gi|1016662341|ref|XP_016058214.1| PREDICTED: glutathione peroxidase 1, partial [Miniopterus natalensis]
 Query range: 1-180  (total 180)

 Target: /data/www-rg/seblastian_results/725904560/tempfiles/temptarget.fasta
 Chromosome: LDJU01000232.1:subseq_1821822,10787_ Strand: -
 Positions:
 -Exon 1  5611         5793
 -Exon 2  4979         5335

 Redox box: no

Query   LAGGEPVSLGSLQGKVLLIENVASLUGTTVRDYTQMNELQKRLGPRGLVVLGFPCNQFGHQ <---Intron---> ENAKNEEILNSLKYVRPGGGFEP
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| <   275bp    > |||||||||||||||||||||||
Target  LAGGEPVSLGSLQGKVLLIENVASLUGTTVRDYTQMNELQKRLGPRGLVVLGFPCNQFGHQ                ENAKNEEILNSLKYVRPGGGFEP
        cggggcgacgtccgagccagaggtctgaagcgtacaagccaccgccgcggcgtctactgcc                gagaaggacatcatgacgggtgc
        tcggactgtgctagattttaatcctggcctgaacataataagtgcggttttgtcgaatgaa                aacaaaattactaatgcgggtac
        gccggcgcgccggcgggctgtgcgcacagcgcccggcggggctgcgcgcgtccgccgcgtg                gccgcagcgtccgtcgtgcgcgc
                                 *                                                                          

Query   NFTLFEKCEVNGAQAHPLFVFLREALPAPSDDATALMTDPKFIIWSPVCRNDISWNFEKFLVGPDGVPVRRYSRRFPTIDIEPDIEALLTKGPGSA
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Target  NFTLFEKCEVNGAQAHPLFVFLREALPAPSDDATALMTDPKFIIWSPVCRNDISWNFEKFLVGPDGVPVRRYSRRFPTIDIEPDIEALLTKGPGSA
        atactgatggaggcgccctgtccggccgcagggagcaagcataattcgtcagattatgatcggcgggcgcatacctcaagagcgaggccaagcgag
        atcttaagatagcacactttttgactcccgaacccttcacatttgcctggaatcgataatttgcagtctggagggtcctatacatacttcagcggc
        ccgccggcggccgggcaccccgggtgcactccctgcgcccgcccgtggccccccgccggcggcgcggtgcgcccctgctccgaccacggcgggctc
                                                                                                        
 Sequence until next stop: 
TAG
 * 

 Distance CDS-SECIS: 51 ; UGA-SECIS: 513

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = LDJU01000232.1:subseq_1821822,10787_ Strand = - Positions = 4927 - 4853
 Found by:  Infernal (score=36.77) Covels (score=29.33)
 Stem2 length = 11   Apical loop length = 10   Insertion in stem2 = 1, 0
 Free Energy = -23.9

         ..(((((((.......((((((((((.(((((...............)))))))))))))))..........)))))))..
 model   uucggucaugcgUuaAUGAcGgccug-gcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuu-u-uuucaugaccggc
         ..(((((((((.....{[[{((((((.(((((........-----..)))))))))))}]]}......-.)))))))))..
 target  CUGGGGGUUUUAUCCAUGACGGUGUUUCCUCUAAACCUGC-----AAGGAGGAAUGCCUGAUGUCCAG-GAAAAUCCCCUA
                         ****            ^^^                       ****