_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 8e-77
 Query name: gi|1016718817|ref|XP_016079307.1| PREDICTED: glutathione peroxidase 2 [Miniopterus natalensis]
 Query range: 1-190  (total 190)

 Target: /data/www-rg/seblastian_results/856909615/tempfiles/temptarget.fasta
 Chromosome: LDJU01000087.1:subseq_3576062,13129_ Strand: +
 Positions:
 -Exon 1  5000         5221
 -Exon 2  7782         8129

 Redox box: no

Query   MAFIAKSFYDLSAVSLDGEKIDFNTFRGRAVLIENVASLUGTTTRDFTQLNELQCRFPRRLVVLGFPSNQFGHQ <---Intron---> ENCQNEEILN
        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| <   2560bp   > ||||||||||
Target  MAFIAKSFYDLSAVSLDGEKIDFNTFRGRAVLIENVASLUGTTTRDFTQLNELQCRFPRRLVVLGFPSNQFGHQ                ENCQNEEILN
        agtagatttgctggacgggaagtaatcgcggcagaggtctgaaacgtaccagcctctcaccggcgtctactgcc                gatcaggaca
        tcttcactaatcctgtagaatatactgggctttaatcctggcccgatcataataggtcggttttgtccaatgaa                aagaaaatta
        ggctcgcctctttgcgtgggatctacacggggtgcaagcacaccgcccgccggacctcgcggcccctccatatg                gctgtggcgc
                                               *                                                            

Query   SLKYVRPGGGFQPTFTLTQKCEVNGQNEHPVFAYLKDKLPYPYDDPFSLMTDPKLIIWSPVRRSDVSWNFEKFLIGPEGEPFRRYSRTFPTANIEPDIKR
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Target  SLKYVRPGGGFQPTFTLTQKCEVNGQNEHPVFAYLKDKLPYPYDDPFSLMTDPKLIIWSPVRRSDVSWNFEKFLIGPEGEPFRRYSRTFPTANIEPDIKR
        acatgccgggtccatacacatggagcagccgtgtcagacctctggcttcaagcacaatacgcctggttatgatcagcgggctcctacatcagaagcgaac
        gtaatgcgggtacctctcaagatagaaaacttcataaatcacaaactcttcacatttggctggcatcgataatttgcagactggaggctcccatacatag
        tcgtcctgtgcgcctctcggtggttgcgttccccggcgccctcccgttcgcccgcccgcagccacgcgctggcgcgggggccacccccccccccggccgc
                                                                                                            

Query   LLKVAI
        ||||||
Target  LLKVAI
        ccagga
        ttatct
        ccatca
              
 Sequence until next stop: 
TAG
 * 

 Distance CDS-SECIS: 202 ; UGA-SECIS: 652

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = LDJU01000087.1:subseq_3576062,13129_ Strand = + Positions = 8332 - 8396
 Found by:  Infernal (score=29.41) Covels (score=29.08)
 Stem2 length = 9   Apical loop length = 11   Insertion in stem2 = 0, 0
 Free Energy = -18.7

         ..(((((((.......(((((((((((((((...............)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         ....(((((---(...([[{(((((({(((......-..-----...)))}))))))}]])----...))))))....
 target  GGCCUUCAC---AGAAUGAUGGCACCUUCCUAAACC-CC-----UACGGGCGGUGUCUGAG----GCGUGUGAACAGC
                         ****           ^^^                       ****