_______________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:QUE_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 4e-27
 Query name: gi|1016709586|ref|XP_016075298.1| PREDICTED: type I iodothyronine deiodinase isoform X3 [Miniopterus natalensis]
 Query range: 1-185  (total 185)

 Target: /data/www-rg/seblastian_results/30792151/tempfiles/temptarget.fasta
 Chromosome: LDJU01000648.1:subseq_124795,22575_ Strand: +
 Positions:
 -Exon 1  5000         5139
 -Exon 2  10939        11087
 -Exon 3  15313        15512
 -Exon 4  17486        17551

 Redox box: no

Query   MGLPQPGLWLKKLWVLLQVALHVILGKVQLKLFPRRVKQHILAMNRK <---Intron---> TGKRPLVLNFGSCTUPSFLFKFDQFKRLIEDFSSTAD
        ||||||||||||||||||||||||||||||||||||||||||||||  <   5799bp   > /||||||||||||||||||||||||||||||||||||
Target  MGLPQPGLWLKKLWVLLQVALHVILGKVQLKLFPRRVKQHILAMNRN                SGKRPLVLNFGSCTUPSFLFKFDQFKRLIEDFSSTAD
        agccccgctcaactgctcggccgatgagccactcaagaccatgaaca                tgaaccgcatgatatcttctatgctaacaggtatagg
        tgtcacgtgtaatgtttatctatttgatatattcggtaaattctaga                cgagctttatgggcgcctttataatagttaatgccca
        gggcgaggggggcgacgggcctgcacaaggggtcgagggtcgcgcg                tacggagggttattcatgttcatcacgattatttcaat
                                                                                     *                      

Query   FLVIYIEEAHASD <---Intron---> GWAFKNNVVIRTHRNLQDRLQAARLLLDRSPGCPVVVDAMKNQSSQLYAALPDRLYVLQEGRILYK <---
        ||||||||||||| <   4225bp   > |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| <   
Target  FLVIYIEEAHASD                GWAFKNNVVIRTHRNLQDRLQAARLLLDRSPGCPVVVDAMKNQSSQLYAALPDRLYVLQEGRILYK     
        tcgatagggcgtg                gtgtaaaggaaaccaccgcccggccccgaacgtcgggggaaacaacctggccgactgccggaacta     
        ttttataacacc                aggctaaatttgcagataagtaccgtttaggcggctttactaaaggatacctcagtattaaggttaa     
        ccctctaaataa                tcgttgccgccgtcgccgcccgaccgggcgccgctgggtaggcgccgccgaggcactgcggcgtccg     
                                                                                                            

Query   Intron---> GKPGPWNYHPEEVRAVLEKLHS
        1973bp   > ||||||||||||||||||||||
Target             GKPGPWNYHPEEVRAVLEKLHS
                   gacgctatccgggcggcgacca
                   gacgcgaaacaatgcttaatag
                   tatctgcttagattttgagcct
                                         
 Sequence until next stop: 
TAA
 * 

 Distance CDS-SECIS: 890 ; UGA-SECIS: 1259

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = LDJU01000648.1:subseq_124795,22575_ Strand = + Positions = 18442 - 18513
 Found by:  Infernal (score=32.29) Covels (score=26.33)
 Stem2 length = 8   Apical loop length = 14   Insertion in stem2 = 0, 0
 Free Energy = -9.08

         ..(((((((.......(((((((((((((((...............)))))))))))))))..........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuu-u-uuucaugaccggc
         ...((((((.--....{[[{(({((((((..........-----....))))))}))}]]}......-...))))))...
 target  UUCAUAUUUG--UUUAUGAUGGCCACAGCCUAAAGUGCA-----CACAGCUGUGACUUGAUGUGAAA-ACAAAAUAUUUU
                         ****           ^^^                       ****