_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 3e-81
 Query name: gi|1016641130|ref|XP_016079186.1| PREDICTED: selenoprotein P isoform X1 [Miniopterus natalensis] >gi|1016641132|ref|XP_016079195.1| PREDICTED: selenoprotein P isoform X1 [Miniopterus natalensis]
 Query range: 1-388  (total 388)

 Target: /data/www-rg/seblastian_results/697645695/tempfiles/temptarget.fasta
 Chromosome: LDJU01000126.1:subseq_45544,14517_ Strand: +
 Positions:
 -Exon 1  5000         5202
 -Exon 2  6036         6248
 -Exon 3  7615         7732
 -Exon 4  8945         9574

 Redox box: YES

Query   MWRSLGLALALCLLPWGGTESQGESATCKRPPAWSIGDQDPMLDSYGSVTVVALLQASUPFCIMQAHS <---Intron---> LEDLRVKLEKEGFSNI
        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| <   833bp    > ||||||||||||||||
Target  MWRSLGLALALCLLPWGGTESQGESATCKRPPAWSIGDQDPMLDSYGSVTVVALLQASUPFCIMQAHS                LEDLRVKLEKEGFSNI
        ataacgcgcgctccctggagacggagatacccgtaaggcgcacgttgtgagggcccgatcttaacgca                tggccgacgaggttaa
        tgggtgtctctgttcgggcagagagccgagcccggtgaaacttacagctcttcttacggctgttacag                taatgtataaagtcat
        ggacgggcgtcccccgagggcggaccttggtgcgcagcacaggccccagcggcttaccaccccggcc                tgacgaaaggaatttcc
                                                                  *                                         

Query   SYIVVNHQGISSRSKYMDLKSKVSEHIPVYQQEENQTDVWTLLNGNKDDFLVYDR <---Intron---> CGRLVHHLGLPFSILNFPYVEEAIKTAYC
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||| <   1366bp   > |||||||||||||||||||||||||||||
Target  SYIVVNHQGISSRSKYMDLKSKVSEHIPVYQQEENQTDVWTLLNGNKDDFLVYDR                CGRLVHHLGLPFSILNFPYVEEAIKTAYC
        ttaggaccgattctatagcaaagtgcacgtccggacaggtactagaaggtcgtga                tgccgcccgccttacatctggggaaagtt
        catttaaagtccgcaatatagatcaatctaaaaaaacatgcttagaaaatttaag                gggttaatgtctcttatcataactaccag
        ctttcttaacttaaatgttatgtagcttttaaaacaatcgtcatatatcccatc                accccgtcccggcccgtcgtgagctgttcc
                                                                                                            

Query   RKNCGNCSFT <---Intron---> TLEDEDFCKNASLAFEKSTTEAPGPQPHHHNHHHHHHHHHRHHYHRHGHEHTGIGQLADNQQPEAPNESEPAPS
        |||||||||| <   1212bp   > ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Target  RKNCGNCSFT                TLEDEDFCKNASLAFEKSTTEAPGPQPHHHNHHHHHHHHHRHHYHRHGHEHTGIGQLADNQQPEAPNESEPAPS
        aaatgattta                acggggttaagttgtgaaaaggcgccccccacccccccccccctcacgcgcagagccggacccggcagtgcgct
        gaaggagctc                ctaaaatgaacctctaagccaccgcacaaaaaaaaaaaaagaaaagagaaacgtgatcaaaacaccaacacccc
        agttacctcg                cgatacctgtatgttgacaagtggagctctcttcttcttcatctcgcgcactgccgtactggaaaacatgccct
                                                                                                            

Query   PGPLNHQKLKGPQGQGHPVHUDVSGETLPSSSSQRKLUGRKCINQLLUQLPKDSELAPSSUCUHCRHLVFEHTGSAITUQCRESLPSLCSUQGLWAEANV
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Target  PGPLNHQKLKGPQGQGHPVHUDVSGETLPSSSSQRKLUGRKCINQLLUQLPKDSELAPSSUCUHCRHLVFEHTGSAITUQCRESLPSLCSUQGLWAEANV
        cgccaccacagccgcgccgctggtggatcttttcaactgaataactctctcagtgtgcaatttctcccgtgcagtgaatctagacctttatcgctgggag
        cgctaaaatagcagagactagatcgactcccccagatgggagtaattgatcaacatccgggggaggatttaacgcctcgaggagtcctgggagtgcacat
        actgccggcgccgagtcagcatgatagaccttaggacagggtatgacaggcatagaccccacattccgatacagtaccagtaaccctatcagacgaggtc
                            *                *         *            * *               *           *         

Query   IESUQURLPPTAUQVGQQPEPTEASTSUSUKTEGEM
        ||||||||||||||||||||||||||||||||||||
Target  IESUQURLPPTAUQVGQQPEPTEASTSUSUKTEGEM
        agttctctccagtcggcccgcaggaaatataaggga
        tacgaggtccccgatgaacaccacgcggggacagat
        tgtagatgtctcaggtggcgcagccccacaatgaag
           * *      *              * *      
 Sequence until next stop: 
TGA
 * 

 Distance CDS-SECIS: 707 ; UGA-SECIS: 725

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = LDJU01000126.1:subseq_45544,14517_ Strand = + Positions = 10282 - 10347
 Found by:  Infernal (score=27.32) Covels (score=16.02)
 Stem2 length = 10   Apical loop length = 10   Insertion in stem2 = 1, 0
 Free Energy = -14.1

         ..(((((((.......((((((((((.(((((...............)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccug-gcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         ...((((((---....([[{((((([.((((......--.-----...))))])))))}]])..--..-.))))))...
 target  UUUCCACAG---UCAAUGAUGGUUCAAUAGGUAAACU--A-----AGUCCUAGGAACCUGAACU--CC-UUUGUGGUUA
                         ****            ^^^                       ****                 
_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:2     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 3e-81
 Query name: gi|1016641130|ref|XP_016079186.1| PREDICTED: selenoprotein P isoform X1 [Miniopterus natalensis] >gi|1016641132|ref|XP_016079195.1| PREDICTED: selenoprotein P isoform X1 [Miniopterus natalensis]
 Query range: 1-388  (total 388)

 Target: /data/www-rg/seblastian_results/697645695/tempfiles/temptarget.fasta
 Chromosome: LDJU01000126.1:subseq_45544,14517_ Strand: +
 Positions:
 -Exon 1  5000         5202
 -Exon 2  6036         6248
 -Exon 3  7615         7732
 -Exon 4  8945         9574

 Redox box: YES

Query   MWRSLGLALALCLLPWGGTESQGESATCKRPPAWSIGDQDPMLDSYGSVTVVALLQASUPFCIMQAHS <---Intron---> LEDLRVKLEKEGFSNI
        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| <   833bp    > ||||||||||||||||
Target  MWRSLGLALALCLLPWGGTESQGESATCKRPPAWSIGDQDPMLDSYGSVTVVALLQASUPFCIMQAHS                LEDLRVKLEKEGFSNI
        ataacgcgcgctccctggagacggagatacccgtaaggcgcacgttgtgagggcccgatcttaacgca                tggccgacgaggttaa
        tgggtgtctctgttcgggcagagagccgagcccggtgaaacttacagctcttcttacggctgttacag                taatgtataaagtcat
        ggacgggcgtcccccgagggcggaccttggtgcgcagcacaggccccagcggcttaccaccccggcc                tgacgaaaggaatttcc
                                                                  *                                         

Query   SYIVVNHQGISSRSKYMDLKSKVSEHIPVYQQEENQTDVWTLLNGNKDDFLVYDR <---Intron---> CGRLVHHLGLPFSILNFPYVEEAIKTAYC
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||| <   1366bp   > |||||||||||||||||||||||||||||
Target  SYIVVNHQGISSRSKYMDLKSKVSEHIPVYQQEENQTDVWTLLNGNKDDFLVYDR                CGRLVHHLGLPFSILNFPYVEEAIKTAYC
        ttaggaccgattctatagcaaagtgcacgtccggacaggtactagaaggtcgtga                tgccgcccgccttacatctggggaaagtt
        catttaaagtccgcaatatagatcaatctaaaaaaacatgcttagaaaatttaag                gggttaatgtctcttatcataactaccag
        ctttcttaacttaaatgttatgtagcttttaaaacaatcgtcatatatcccatc                accccgtcccggcccgtcgtgagctgttcc
                                                                                                            

Query   RKNCGNCSFT <---Intron---> TLEDEDFCKNASLAFEKSTTEAPGPQPHHHNHHHHHHHHHRHHYHRHGHEHTGIGQLADNQQPEAPNESEPAPS
        |||||||||| <   1212bp   > ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Target  RKNCGNCSFT                TLEDEDFCKNASLAFEKSTTEAPGPQPHHHNHHHHHHHHHRHHYHRHGHEHTGIGQLADNQQPEAPNESEPAPS
        aaatgattta                acggggttaagttgtgaaaaggcgccccccacccccccccccctcacgcgcagagccggacccggcagtgcgct
        gaaggagctc                ctaaaatgaacctctaagccaccgcacaaaaaaaaaaaaagaaaagagaaacgtgatcaaaacaccaacacccc
        agttacctcg                cgatacctgtatgttgacaagtggagctctcttcttcttcatctcgcgcactgccgtactggaaaacatgccct
                                                                                                            

Query   PGPLNHQKLKGPQGQGHPVHUDVSGETLPSSSSQRKLUGRKCINQLLUQLPKDSELAPSSUCUHCRHLVFEHTGSAITUQCRESLPSLCSUQGLWAEANV
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Target  PGPLNHQKLKGPQGQGHPVHUDVSGETLPSSSSQRKLUGRKCINQLLUQLPKDSELAPSSUCUHCRHLVFEHTGSAITUQCRESLPSLCSUQGLWAEANV
        cgccaccacagccgcgccgctggtggatcttttcaactgaataactctctcagtgtgcaatttctcccgtgcagtgaatctagacctttatcgctgggag
        cgctaaaatagcagagactagatcgactcccccagatgggagtaattgatcaacatccgggggaggatttaacgcctcgaggagtcctgggagtgcacat
        actgccggcgccgagtcagcatgatagaccttaggacagggtatgacaggcatagaccccacattccgatacagtaccagtaaccctatcagacgaggtc
                            *                *         *            * *               *           *         

Query   IESUQURLPPTAUQVGQQPEPTEASTSUSUKTEGEM
        ||||||||||||||||||||||||||||||||||||
Target  IESUQURLPPTAUQVGQQPEPTEASTSUSUKTEGEM
        agttctctccagtcggcccgcaggaaatataaggga
        tacgaggtccccgatgaacaccacgcggggacagat
        tgtagatgtctcaggtggcgcagccccacaatgaag
           * *      *              * *      
 Sequence until next stop: 
TGA
 * 

 Distance CDS-SECIS: 264 ; UGA-SECIS: 282

------- SECIS element -- id:2 -- grade:A ----
 Chromosome = LDJU01000126.1:subseq_45544,14517_ Strand = + Positions = 9839 - 9921
 Found by:  Infernal (score=26.87) Covels (score=28.83)
 Stem2 length = 9   Apical loop length = 18   Insertion in stem2 = 0, 0
 Free Energy = -20.57

         ..(((((((..........(((((((((((((((...............)))))))))))))))............)))))))..
 model   uucggucaugcg---UuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuu---u-uuucaugaccggc
         ..(((((((..........{[[{(((((((((.......-...........)))))))))}]]}........-...)))))))..
 target  AGUGCUCUACUUGCAUUAAUGAGAACAGGAGCAGAAACU-AUGACCUAGGGGCUCCUGUUGGACAGCCAGCA-AUCUAGAGCGGA
                            ****           ^^^                       ****