Command line: [exonerate --exhaustive yes -m p2g --showtargetgff -q SELENOU1.anole.fa -t SELENOU1.extraccio.KQ752674.1.fa] Hostname: [ws101089U] C4 Alignment: ------------ Query: SELENOU1.ANOLE Target: KQ752674.1:subseq(21203,54689) Gekko japonicus isolate JY-2015 unplaced genomic scaffold scaffold2974, whole genome shotgun sequence Model: protein2genome:local Raw score: 901 Query range: 4 -> 233 Target range: 19999 -> 34689 5 : AsnProLeuAspLeuAspMetCysSerHisLeuGluLeuGlySerPheSerValAlaMet : 24 ::!|||||| !! !||||||! !|||!!.!!!!!:||||||!!!.!!!!!||||||||| SerProLeuIleProAspMetSerSerGlnPheAspLeuGlyCysLeuThrValAlaMet 20000 : TCTCCTCTGATTCCAGATATGTCTTCACAGTTCGACCTGGGGTGCCTCACGGTGGCGATG : 20057 25 : TrpThrIleGlyLeuGlyAlaIleGlyAlaAlaValThrGlyIleIleLeuAlaAsnThr : 44 |||:!!||||||||||||||||||||||||||||||||||||:!!||||||||||||||| TrpSerIleGlyLeuGlyAlaIleGlyAlaAlaValThrGlyValIleLeuAlaAsnThr 20058 : TGGTCCATCGGCCTTGGGGCCATCGGGGCCGCGGTGACGGGGGTCATCCTGGCCAATACG : 20117 45 : AspLeuPheLeuSerLysAlaGluGlnAlaSerLeuAspPheLeuGluAlaIleAspLeu : 64 ||||||||||||||||||||||||:!!|||||||||!!:|||||||||! !||||||||| AspLeuPheLeuSerLysAlaGluLysAlaSerLeuGluPheLeuGluAspIleAspLeu 20118 : GATTTGTTCCTGTCTAAAGCGGAGAAGGCATCGCTGGAGTTTCTGGAGGATATAGATCTG : 20177 65 : LysThrLeuGlyGluGly{A} >>>> Target Intron 1 >>>> {sn}GlnArg : 73 :!!|||||| !! !! !{.} 2248 bp {!.}|||||| GlnThrLeuMetGlyGlu{G}++ ++{lu}GlnArg 20178 : CAGACTCTGATGGGAGAA{G}gt.........................ag{AG}CAAAGA : 22452 74 : ThrPheLysAlaGluGluLeuTrpLysLysAsnGlyAlaValIleMetAlaValArgArg : 93 ||||||||||||! !|||||||||!:!||||||||||||||||||||||||||||||||| ThrPheLysAlaGlyGluLeuTrpArgLysAsnGlyAlaValIleMetAlaValArgArg 22453 : ACGTTCAAAGCCGGGGAGCTGTGGAGGAAGAATGGGGCCGTGATCATGGCGGTGCGGCGA : 22512 94 : ProGlyUnkPheLeuCysArgGlu >>>> Target Intron 2 >>>> GluAlaA : 104 |||||| ||||||||||||||| 4182 bp ||||||| ProGly***PheLeuCysArgGlu++ ++GluAlaA 22513 : CCAGGATGATTTCTGTGCAGAGAGgt.........................agGAGGCTG : 26727 105 : laGluLeuSerSerLeuLysProGlnLeuAspLysLeuGlyValProLeuTyrAlaValV : 124 |||||||||||||||||||||||||||||..!:!!||||||||||||||||||||||||| laGluLeuSerSerLeuLysProGlnLeuSerGlnLeuGlyValProLeuTyrAlaValV 26728 : CCGAGCTGTCCTCTCTGAAGCCCCAGCTCAGCCAGCTGGGGGTCCCGCTTTATGCTGTCG : 26787 125 : alLysGluAsnLeuGlyThrGluValMetAspPheGlnProTyrPheLysGlyGluIleP : 144 ||||||||!!.:!!|||||||||||| !||||||||||||||||||:!!|||!!::!!| alLysGluLysIleGlyThrGluValGluAspPheGlnProTyrPheGluGlyAspValP 26788 : TTAAAGAGAAGATCGGCACGGAAGTGGAGGATTTTCAACCCTATTTCGAGGGAGATGTCT : 26847 145 : heLeuAspGluLys >>>> Target Intron 3 >>>> LysGlnPheTyrGlyPr : 154 |||||||||||||| 5608 bp |||!:!||||||||||| heLeuAspGluLys++ ++LysArgPheTyrGlyPr 26848 : TCCTGGATGAAAAGgt.........................agAAACGATTCTACGGGCC : 32485 155 : oGlnLysArgLysMetLeuPheMetGlyPheIleArgCysSerValTrpArgAsnPhePh : 174 |!:!||||||||||||||||||:!!|||.!!:!!|||!! |||||||||!:!||||||.! oArgLysArgLysMetLeuPheLeuGlyIleValArgTrpSerValTrpLysAsnPheLe 32486 : TCGGAAAAGGAAGATGCTCTTCCTGGGCATCGTTCGGTGGAGCGTCTGGAAGAATTTCCT : 32545 175 : eArgAlaTrpLysSerGlyTyrThrGlyAsnIleAspGlyGluGlyPheValLeuGlyGl : 194 !||||||||| !||||||!:!!:!|||||||||!!:||||||||| !!:!!|||||||| uArgAlaTrpTrpSerGlyPheSerGlyAsnIleGluGlyGluGlyValIleLeuGlyGl 32546 : CCGCGCTTGGTGGAGCGGCTTCAGCGGTAACATCGAAGGAGAAGGCGTCATCCTGGGTGG : 32605 195 : yValPheValValGlyProGlyLysGln >>>> Target Intron 4 >>>> Gly : 204 ||||||||||:!!||||||||||||||| 1965 bp ||| yValPheValIleGlyProGlyLysGln++ ++Gly 32606 : CGTTTTCGTGATCGGTCCTGGGAAGCAGgt.........................agGGC : 34600 205 : ValLeuLeuGluHisArgGluLysGluPheGlyAspLysValSerLeuAspAlaValLeu : 224 ||||||||||||||||||||||||||||||||||||||||||||||||! !||||||||| ValLeuLeuGluHisArgGluLysGluPheGlyAspLysValSerLeuAlaAlaValLeu 34601 : GTCCTCTTGGAGCATCGTGAGAAGGAGTTTGGAGACAAAGTCAGCCTTGCCGCTGTCCTC : 34660 225 : GluAlaValLysAsnIleGlnProGln : 233 !!:|||||||||!!.|||:!! !||| AspAlaValLysLysIleLysValGln 34661 : GATGCCGTTAAGAAGATAAAAGTGCAA : 34689 vulgar: SELENOU1.ANOLE 4 233 . KQ752674.1:subseq(21203,54689) 19999 34689 + 901 M 66 198 S 0 1 5 0 2 I 0 2244 3 0 2 S 1 2 M 30 90 5 0 2 I 0 4178 3 0 2 M 47 141 5 0 2 I 0 5604 3 0 2 M 55 165 5 0 2 I 0 1961 3 0 2 M 30 90 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2016-11-10 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ752674.1:subseq(21203,54689) exonerate:protein2genome:local gene 20000 34689 901 + . gene_id 1 ; sequence SELENOU1.ANOLE ; gene_orientation + KQ752674.1:subseq(21203,54689) exonerate:protein2genome:local cds 20000 20198 . + . KQ752674.1:subseq(21203,54689) exonerate:protein2genome:local exon 20000 20198 . + . insertions 0 ; deletions 0 KQ752674.1:subseq(21203,54689) exonerate:protein2genome:local splice5 20199 20200 . + . intron_id 1 ; splice_site "GT" KQ752674.1:subseq(21203,54689) exonerate:protein2genome:local intron 20199 22446 . + . intron_id 1 KQ752674.1:subseq(21203,54689) exonerate:protein2genome:local splice3 22445 22446 . + . intron_id 0 ; splice_site "AG" KQ752674.1:subseq(21203,54689) exonerate:protein2genome:local cds 22447 22538 . + . KQ752674.1:subseq(21203,54689) exonerate:protein2genome:local exon 22447 22538 . + . insertions 0 ; deletions 0 KQ752674.1:subseq(21203,54689) exonerate:protein2genome:local splice5 22539 22540 . + . intron_id 2 ; splice_site "GT" KQ752674.1:subseq(21203,54689) exonerate:protein2genome:local intron 22539 26720 . + . intron_id 2 KQ752674.1:subseq(21203,54689) exonerate:protein2genome:local splice3 26719 26720 . + . intron_id 1 ; splice_site "AG" KQ752674.1:subseq(21203,54689) exonerate:protein2genome:local cds 26721 26861 . + . KQ752674.1:subseq(21203,54689) exonerate:protein2genome:local exon 26721 26861 . + . insertions 0 ; deletions 0 KQ752674.1:subseq(21203,54689) exonerate:protein2genome:local splice5 26862 26863 . + . intron_id 3 ; splice_site "GT" KQ752674.1:subseq(21203,54689) exonerate:protein2genome:local intron 26862 32469 . + . intron_id 3 KQ752674.1:subseq(21203,54689) exonerate:protein2genome:local splice3 32468 32469 . + . intron_id 2 ; splice_site "AG" KQ752674.1:subseq(21203,54689) exonerate:protein2genome:local cds 32470 32634 . + . KQ752674.1:subseq(21203,54689) exonerate:protein2genome:local exon 32470 32634 . + . insertions 0 ; deletions 0 KQ752674.1:subseq(21203,54689) exonerate:protein2genome:local splice5 32635 32636 . + . intron_id 4 ; splice_site "GT" KQ752674.1:subseq(21203,54689) exonerate:protein2genome:local intron 32635 34599 . + . intron_id 4 KQ752674.1:subseq(21203,54689) exonerate:protein2genome:local splice3 34598 34599 . + . intron_id 3 ; splice_site "AG" KQ752674.1:subseq(21203,54689) exonerate:protein2genome:local cds 34600 34689 . + . KQ752674.1:subseq(21203,54689) exonerate:protein2genome:local exon 34600 34689 . + . insertions 0 ; deletions 0 KQ752674.1:subseq(21203,54689) exonerate:protein2genome:local similarity 20000 34689 901 + . alignment_id 1 ; Query SELENOU1.ANOLE ; Align 20000 5 198 ; Align 22449 72 90 ; Align 26721 102 141 ; Align 32470 149 165 ; Align 34600 204 90 # --- END OF GFF DUMP --- # -- completed exonerate analysis