Command line: [exonerate --exhaustive yes -m p2g --showtargetgff -q SELENOS.anole.fa -t SELENOS.extraccio.KQ752978.1.fa] Hostname: [sitdoc] C4 Alignment: ------------ Query: SPP00000222_2.0 # Protein # Selenoprotein S (SELENOS) # Anole lizard Target: KQ752978.1:subseq(252616,46924) Gekko japonicus isolate JY-2015 unplaced genomic scaffold scaffold924, whole genome shotgun sequence Model: protein2genome:local Raw score: 434 Query range: 12 -> 162 Target range: 4141 -> 26957 13 : LeuPheSerLeuIleAlaValTyrLeuLeuValGlnLysLeuSerLysThrPheArgSer : 32 ||||||! !||||||!.!!.!!:!:!!! !:!!! !!.|||||| !|||! |||||| LeuPheTyrLeuIleGlyAlaPheMetSerIleProAsnLeuSerValThr***ArgSer 4142 : TTGTTTTATCTGATTGGGGCCTTTATGTCAATTCCTAACCTCAGTGTAACATAAAGGTCG : 4199 33 : ThrSerLysHisSerLeuAspThrThrAspIle{Gl} >>>> Target Intron 1 : 44 !!!!!:!!!.!!!:!!!!::!: :::{||} 15768 bp GlyCysArgGlnCysValGluSerLeuTrpVal{Gl}++ 4200 : GGTTGCAGGCAGTGTGTTGAGTCattgtgggtg{gg}gt..................... : 4239 45 : >>>> {y}LeuGluProGluAlaValValArgGlnGlnGluAlaLeuLeuAlaAlaArg : 61 {|}|||||||||||||||:!!||||||!:!:!!||||||:!!:!!||||||||| -+{y}LeuGluProGluAlaIleValArgArgGluGluAlaMetMetAlaAlaArg 4240 : ....gg{g}tTAGAGCCTGAAGCGATCGTTCGGCGAGAGGAAGCCATGATGGCAGCCCGC : 20054 62 : LeuArgMetGlnGluGluLeuAsnAlaGlnAlaGluLysPheLysGluLysGlnLysLys : 81 ! !|||||||||||||||:!!:!!|||||||||! !! |||!:!|||||||||!:!:!! ArgArgMetGlnGluGluIleAspAlaGlnAlaAlaIlePheArgGluLysGlnArgGlu 20055 : CGGAGGATGCAGGAAGAAATTGATGCACAGGCAGCAATTTTCAGGGAAAAGCAGAGAGAG : 20114 82 : >>>> Target Intron 2 >>>> LeuGluGluGluLysArgLysGlnLysIleA : 92 1992 bp ! |||||||||||||||:::|||||||||| ++ ++ArgGluGluGluLysArgArgGlnLysIleA 20115 : gt.........................agCgcgaagaggagaagagaaggcaaAAGATAG : 22139 93 : laMetTrpGluSerMetGlnGluGlyLysSerTyrLysGluAsnLeuArgGlnAsn >> : 111 ||! !||||||||||||:!!||||||||||||||||||! !!.!||| !!|||||| laLysTrpGluSerMetLysGluGlyLysSerTyrLysValThrLeuGlyGlnAsn-+ 22140 : CCAAGTGGGAAAGCATGAAAGAAGGCAAAAGTTACAAGGTGACTCTCGGACAGAACct.. : 22198 112 : >> Target Intron 3 >>>> GlnGluProGlnSerGlyAlaSerThrSerThrSe : 122 88 bp :!!||||||.!. !! !! !!|||||||||.!!:! ++GluGluProAspProArgProSerThrSerAlaAl 22199 : .......................agGAAGAACCTGACCCCAGACCTTCGACATCAGCTGC : 22317 123 : rValProLysProLysProArgSerLysProLeuArgGluGly{G} >>>> Target : 137 !!.!|||||||||||| !!..!!.!||||||||||||...|||{|} 451 aAlaProLysProLysSerGluLysLysProLeuArgSerGly{G}++ 22318 : TGCCCCGAAACCAAAATCAGAGAAGAAACCTTTACGAAGTGGT{G}gt............ : 22365 138 : Intron 4 >>>> {ly}TyrAsnProLeuSerGlyAspGlyGlyGlyThrCysSerTr : 151 8 bp {||}||||||||||||||||||!!:|||||||||:!!|||:!!|| ++{ly}TyrAsnProLeuSerGlyGluGlyGlyGlySerCysAlaTr 22366 : .............ag{GT}TACAACCCCCTCTCGGGAGAAGGTGGCGGGTCCTGTGCATG : 26922 152 : pArgProGlyArgArgGlyProSerSerGlyGly : 162 |||||||||||||||||||||||||||||||||| pArgProGlyArgArgGlyProSerSerGlyGly 26923 : GCGACCGGGACGCAGAGGCCCTTCTTCAGGTGGA : 26957 vulgar: SPP00000222_2.0 12 162 . KQ752978.1:subseq(252616,46924) 4141 26957 + 434 M 31 93 S 0 2 5 0 2 I 0 15764 3 0 2 S 1 1 M 37 111 5 0 2 I 0 1988 3 0 2 M 29 87 5 0 2 I 0 84 3 0 2 M 26 78 S 0 1 5 0 2 I 0 4514 3 0 2 S 1 2 M 25 75 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2016-11-10 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ752978.1:subseq(252616,46924) exonerate:protein2genome:local gene 4142 26957 434 + . gene_id 1 ; sequence SPP00000222_2.0 ; gene_orientation + KQ752978.1:subseq(252616,46924) exonerate:protein2genome:local cds 4142 4236 . + . KQ752978.1:subseq(252616,46924) exonerate:protein2genome:local exon 4142 4236 . + . insertions 0 ; deletions 0 KQ752978.1:subseq(252616,46924) exonerate:protein2genome:local splice5 4237 4238 . + . intron_id 1 ; splice_site "gt" KQ752978.1:subseq(252616,46924) exonerate:protein2genome:local intron 4237 20004 . + . intron_id 1 KQ752978.1:subseq(252616,46924) exonerate:protein2genome:local splice3 20003 20004 . + . intron_id 0 ; splice_site "gg" KQ752978.1:subseq(252616,46924) exonerate:protein2genome:local cds 20005 20116 . + . KQ752978.1:subseq(252616,46924) exonerate:protein2genome:local exon 20005 20116 . + . insertions 0 ; deletions 0 KQ752978.1:subseq(252616,46924) exonerate:protein2genome:local splice5 20117 20118 . + . intron_id 2 ; splice_site "GT" KQ752978.1:subseq(252616,46924) exonerate:protein2genome:local intron 20117 22108 . + . intron_id 2 KQ752978.1:subseq(252616,46924) exonerate:protein2genome:local splice3 22107 22108 . + . intron_id 1 ; splice_site "AG" KQ752978.1:subseq(252616,46924) exonerate:protein2genome:local cds 22109 22195 . + . KQ752978.1:subseq(252616,46924) exonerate:protein2genome:local exon 22109 22195 . + . insertions 0 ; deletions 0 KQ752978.1:subseq(252616,46924) exonerate:protein2genome:local splice5 22196 22197 . + . intron_id 3 ; splice_site "CT" KQ752978.1:subseq(252616,46924) exonerate:protein2genome:local intron 22196 22283 . + . intron_id 3 KQ752978.1:subseq(252616,46924) exonerate:protein2genome:local splice3 22282 22283 . + . intron_id 2 ; splice_site "AG" KQ752978.1:subseq(252616,46924) exonerate:protein2genome:local cds 22284 22362 . + . KQ752978.1:subseq(252616,46924) exonerate:protein2genome:local exon 22284 22362 . + . insertions 0 ; deletions 0 KQ752978.1:subseq(252616,46924) exonerate:protein2genome:local splice5 22363 22364 . + . intron_id 4 ; splice_site "GT" KQ752978.1:subseq(252616,46924) exonerate:protein2genome:local intron 22363 26880 . + . intron_id 4 KQ752978.1:subseq(252616,46924) exonerate:protein2genome:local splice3 26879 26880 . + . intron_id 3 ; splice_site "aG" KQ752978.1:subseq(252616,46924) exonerate:protein2genome:local cds 26881 26957 . + . KQ752978.1:subseq(252616,46924) exonerate:protein2genome:local exon 26881 26957 . + . insertions 0 ; deletions 0 KQ752978.1:subseq(252616,46924) exonerate:protein2genome:local similarity 4142 26957 434 + . alignment_id 1 ; Query SPP00000222_2.0 ; Align 4142 13 93 ; Align 20006 45 111 ; Align 22109 82 87 ; Align 22284 111 78 ; Align 26883 138 75 # --- END OF GFF DUMP --- # -- completed exonerate analysis