Command line: [exonerate --exhaustive yes -m p2g --showtargetgff -q SELENOP112.anole.fa -t SELENOP112.extraccio.KQ748396.1.fa]
Hostname: [ws101092U]

C4 Alignment:
------------
         Query: SPP00000217_2.0 # Protein # Selenoprotein P (SELENOP) # Anole lizard 
        Target: KQ748396.1:subseq(667954,6508) Gekko japonicus isolate JY-2015 unplaced genomic scaffold scaffold258, whole genome shotgun sequence:[revcomp]
         Model: protein2genome:local
     Raw score: 727
   Query range: 2 -> 168
  Target range: 4508 -> 1999

    3 : ValValIleSerAlaThrGlnAlaGluValThrGluAsnLysThrArgIleCysGlnProAl :   23
        :!!||||||!!!||||||! !|||!!:|||.!!||||||!:!!:!!:!||||||||||||||
        LeuValIleThrAlaThrLeuAlaAspValAlaGluAsnArgSerGlnIleCysGlnProAl
 4508 : TTGGTGATTACTGCCACACTGGCAGATGTGGCTGAGAACAGGAGCCAAATATGCCAGCCTGC : 4448

   24 : aProLeuTrpLysIleAsnGlyThrAlaProMetAlaGlyMetGluGlyGlnValThrValV :   44
        |||||||||||||||||||||||||!.!||||||! !|||:!!|||||||||||||||||||
        aProLeuTrpLysIleAsnGlyThrValProMetAspGlyValGluGlyGlnValThrValV
 4447 : ACCACTCTGGAAGATCAATGGGACAGTCCCAATGGATGGGGTGGAGGGCCAAGTGACAGTAG : 4385

   45 : alAlaLeuLeuLysAlaSerUnkProPheCysLeuLysGlnAlaAla{As}  >>>> Targ :   60
        ||||||||||||||||||||   ! !|||||||||||||||||||||{!:}           
        alAlaLeuLeuLysAlaSer***GlnPheCysLeuLysGlnAlaAla{Se}++         
 4384 : TGGCCCTGTTAAAAGCAAGCTGACAGTTCTGTCTCAAGCAAGCTGCC{AG}gt......... : 4333

   61 : et Intron 1 >>>>  {n}IleGlyGlyLeuGlnLysLysLeuSerAsnGluGlyValAl :   74
         614 bp           {!}:!!|||.!!||||||||||||||||||:!!:!!|||:!!!.
                        ++{r}LeuGlySerLeuGlnLysLysLeuSerHisLysGlyMetVa
 4332 : ................ag{C}CTTGGCAGCTTGCAGAAGAAGCTGTCCCATAAAGGGATGGT : 3681

   75 : aAsnValSerPheLeuIleValAsnGluLysThrProLeuSerArgAlaMetTyrTrpGluL :   95
        !|||:!!||||||:!!|||||||||||||||||||||!!!||||||||||||||||||||||
        lAsnIleSerPheMetIleValAsnGluLysThrProPheSerArgAlaMetTyrTrpGluL
 3680 : CAATATAAGCTTCATGATTGTGAATGAGAAGACTCCTTTTTCCCGGGCAATGTATTGGGAGC : 3618

   96 : euLysArgAsnAlaProGlnGlyIleProValTyrGlnGlnGlnIleLeuGluProAspVal :  115
        ||||||||:!!||||||:!!|||||||||||||||||||||:!!||||||||||||||||||
        euLysArgHisAlaProGluGlyIleProValTyrGlnGlnGluIleLeuGluProAspVal
 3617 : TCAAGCGGCATGCTCCAGAGGGAATTCCTGTTTACCAGCAGGAGATCTTGGAACCTGACGTC : 3558

  116 : TrpGlnIleLeuAspGlyAspLysAspAspPheLeuIleTyrAsp{Ar}  >>>> Target :  131
        |||||||||||| !!||||||||||||||||||||||||||||||{||}           13
        TrpGlnIleLeuHisGlyAspLysAspAspPheLeuIleTyrAsp{Ar}++           
 3557 : TGGCAAATTCTACATGGGGACAAGGATGACTTCCTGATCTATGAC{AG}gt........... : 3506

  132 :  Intron 2 >>>>  {g}CysSerArgLeuThrPheHisIleGlnLeuProTyrSerPheL :  146
        97 bp           {|}||||||!:!||||||||||||||||||||||||||||||||||
                      ++{g}CysSerLysLeuThrPheHisIleGlnLeuProTyrSerPheL
 3505 : ..............ag{G}TGCAGCAAGCTGACTTTCCACATCCAGCTGCCATACAGTTTCC : 2068

  147 : euHisLeuProTyrValGluAlaAlaValHisTyrThrHisArgLysAspTyrCysGlyAsn :  166
        |||||!!!||||||||||||||||||||||||:!!|||:!!!.!||||||||||||||||||
        euHisPheProTyrValGluAlaAlaValHisHisThrTyrHisLysAspTyrCysGlyAsn
 2067 : TGCACTTCCCTTATGTTGAAGCTGCTGTACACCACACGTACCACAAGGACTACTGTGGCAAT : 2008

  167 : CysSer :  168
        ||||||
        CysSer
 2007 : TGTTCC : 2000

vulgar: SPP00000217_2.0 2 168 . KQ748396.1:subseq(667954,6508) 4508 1999 - 727 M 57 171 S 0 2 5 0 2 I 0 610 3 0 2 S 1 1 M 70 210 S 0 2 5 0 2 I 0 1393 3 0 2 S 1 1 M 37 111
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2016-11-10
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
KQ748396.1:subseq(667954,6508)	exonerate:protein2genome:local	gene	2000	4508	727	-	.	gene_id 1 ; sequence SPP00000217_2.0 ; gene_orientation +
KQ748396.1:subseq(667954,6508)	exonerate:protein2genome:local	cds	4336	4508	.	-	.	
KQ748396.1:subseq(667954,6508)	exonerate:protein2genome:local	exon	4336	4508	.	-	.	insertions 0 ; deletions 0
KQ748396.1:subseq(667954,6508)	exonerate:protein2genome:local	splice5	4334	4335	.	-	.	intron_id 1 ; splice_site "GT"
KQ748396.1:subseq(667954,6508)	exonerate:protein2genome:local	intron	3722	4335	.	-	.	intron_id 1
KQ748396.1:subseq(667954,6508)	exonerate:protein2genome:local	splice3	3722	3723	.	-	.	intron_id 0 ; splice_site "AG"
KQ748396.1:subseq(667954,6508)	exonerate:protein2genome:local	cds	3509	3721	.	-	.	
KQ748396.1:subseq(667954,6508)	exonerate:protein2genome:local	exon	3509	3721	.	-	.	insertions 0 ; deletions 0
KQ748396.1:subseq(667954,6508)	exonerate:protein2genome:local	splice5	3507	3508	.	-	.	intron_id 2 ; splice_site "GT"
KQ748396.1:subseq(667954,6508)	exonerate:protein2genome:local	intron	2112	3508	.	-	.	intron_id 2
KQ748396.1:subseq(667954,6508)	exonerate:protein2genome:local	splice3	2112	2113	.	-	.	intron_id 1 ; splice_site "AG"
KQ748396.1:subseq(667954,6508)	exonerate:protein2genome:local	cds	2000	2111	.	-	.	
KQ748396.1:subseq(667954,6508)	exonerate:protein2genome:local	exon	2000	2111	.	-	.	insertions 0 ; deletions 0
KQ748396.1:subseq(667954,6508)	exonerate:protein2genome:local	similarity	2000	4508	727	-	.	alignment_id 1 ; Query SPP00000217_2.0 ; Align 4509 3 171 ; Align 3721 61 210 ; Align 2111 132 111
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis