
genewise output
Score 394.08 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
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SPP00001599_2.0    1 KLGLCVLCGLPAAGKSTFARALALRLRRERGWAVGVLSYDDVLPLALPD 
                     KLGLCVLCGLPAAGKSTFARALAL+L++ERGWAVGVLSYDDVL   LPD 
                     KLGLCVLCGLPAAGKSTFARALALQLQQERGWAVGVLSYDDVLSPVLPD 
LZPO01108068.1:50000 acgctgctgtcgggatatgcgcgcccccgcgtggggcttgggctcgccg 
                     atgtgttggtcccgacctcgctctataaagggctgttcaaattccttca 
                     ggagccgccgggtaggccgttgccggggggcgcgcccccccggccgcgc 


SPP00001599_2.0   50 CDGTQPR                       PSQWKMFRQELLKHLECFL 
                       GTQ R                       PSQWKMFRQELLKHLECFL 
                     RSGTQLR                       PSQWKMFRQELLKHLECFL 
LZPO01108068.1:50147 ctgacccGTCAGCT  Intron 1   TAGctctaatccgctaccgttc 
                     gcgcatg<0-----[50168:52047]-0>ccagattgaattaatagtt 
                     ctcagtg                       acagagtaaagagcgacct 


SPP00001599_2.0   76 VAVISGAQMSAPPNRTEAVWEDFITCLKSQDLMIFPTALEAQPCHLLAK 
                     VAVISG QMSAPPNR+EAVW+DFITCLK+Q  +IF  A EAQ CHLLAK 
                     VAVISGGQMSAPPNRSEAVWKDFITCLKNQ-YLIFSAAHEAQSCHLLAK 
LZPO01108068.1:52105 gggaaggcatgccaaagggtagtaattaac ttattggcggcttcctga 
                     tcttgggatccccaggactgaattcgtaaa atttcccaacacgattca 
                     ggttcgtggtcaccgtacggattatcaacg tgcttagtgcgtcccgaa 


SPP00001599_2.0  125 PAVSRPLFLVLDDNFYYQ                          SLGFC 
                      AVSRPLFLVLDDNFYYQ                          SLGFC 
                     TAVSRPLFLVLDDNFYYQ          N:N[aat]        SLGFC 
LZPO01108068.1:52249 aggtaccttgtggatttcAGTATGAG  Intron 2   CAGATtcgtt 
                     cctcgctttttaaataaa <1-----[52304:52573]-1>  ctgtg 
                     ttttatgtggatccttca                          agctc 


SPP00001599_2.0  149 QLFLDCPLETCLKRNGERSQPLPDETIQLMGRKIEKPNPEKNAWEHNSL 
                     QLFLDCPLETCL RNG+R QPLP+ETI LM +KIE+PNPEKNAWEHNSL 
                     QLFLDCPLETCLLRNGQRPQPLPNETIHLMEKKIERPNPEKNAWEHNSL 
LZPO01108068.1:52591 ccttgtccgattcaagcacccccagaaccagaaagacacgaagtgcaac 
                     atttagctacgttgagagcactcaactattaaatagcacaaacgaaagt 
                     gctattcgagtgggtcgacgagttgccccggagaagcctgatcgacccc 


SPP00001599_2.0  198 IIQSSACSLEA                                       
                     IIQSSACSLEA                                       
                     IIQSSACSLEA                                       
LZPO01108068.1:52738 aacatgtttgg                                       
                     ttagccgctac                                       
                     atgtaattggc                                       


//
Making a N in phase 1 intron
>LZPO01108068.1:subseq(124117,53592).pep
KLGLCVLCGLPAAGKSTFARALALQLQQERGWAVGVLSYDDVLSPVLPDRSGTQLRPSQW
KMFRQELLKHLECFLVAVISGGQMSAPPNRSEAVWKDFITCLKNQYLIFSAAHEAQSCHL
LAKTAVSRPLFLVLDDNFYYQNSLGFCQLFLDCPLETCLLRNGQRPQPLPNETIHLMEKK
IERPNPEKNAWEHNSLIIQSSACSLEA
//
>LZPO01108068.1:subseq(124117,53592).[50000:52770].sp
AAGCTGGGACTGTGCGTCCTGTGCGGCTTGCCGGCGGCTGGAAAGTCGACCTTCGCGCGT
GCTCTGGCCCTCCAGCTGCAGCAGGAGCGGGGCTGGGCCGTGGGCGTCCTCTCCTACGAC
GACGTGCTGTCCCCCGTGCTCCCGGACCGCTCTGGCACACAGCTTCGGCCATCCCAATGG
AAAATGTTTCGACAAGAACTGTTAAAGCACCTGGAATGCTTCCTTGTGGCGGTTATTAGC
GGGGGTCAGATGTCTGCCCCACCCAACAGGAGTGAAGCCGTGTGGAAAGATTTTATAACT
TGCTTAAAAAACCAGTATTTGATCTTTTCTGCAGCGCATGAGGCCCAGTCTTGCCACCTC
TTGGCAAAAACTGCTGTTTCTAGACCTCTGTTTTTGGTGTTAGATGACAACTTTTATTAC
CAAAATTCACTGGGCTTTTGCCAGCTCTTTTTAGATTGTCCCCTGGAAACGTGTTTGCTG
AGGAATGGCCAGAGACCCCAGCCACTGCCTAATGAGACCATCCACCTCATGGAGAAAAAG
ATAGAAAGGCCCAACCCTGAGAAAAATGCCTGGGAACACAACAGCCTCATAATTCAGAGT
TCAGCATGTTCTTTGGAGGCC
//
LZPO01108068.1:subseq(124117,53592)	GeneWise	match	50000	52770	394.08	+	.	LZPO01108068.1:subseq(124117,53592)-genewise-prediction-1
LZPO01108068.1:subseq(124117,53592)	GeneWise	cds	50000	50167	0.00	+	0	LZPO01108068.1:subseq(124117,53592)-genewise-prediction-1
LZPO01108068.1:subseq(124117,53592)	GeneWise	intron	50168	52047	0.00	+	.	LZPO01108068.1:subseq(124117,53592)-genewise-prediction-1
LZPO01108068.1:subseq(124117,53592)	GeneWise	cds	52048	52303	0.00	+	0	LZPO01108068.1:subseq(124117,53592)-genewise-prediction-1
LZPO01108068.1:subseq(124117,53592)	GeneWise	intron	52304	52573	0.00	+	.	LZPO01108068.1:subseq(124117,53592)-genewise-prediction-1
LZPO01108068.1:subseq(124117,53592)	GeneWise	cds	52574	52770	0.00	+	2	LZPO01108068.1:subseq(124117,53592)-genewise-prediction-1
//
