
genewise output
Score 330.56 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
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SPP00001584_2.0   28 GSCRDKKNCKVVFSQQELRKRLTPLQYHVTQEKGTE              
                     GSCRDKKNCKVVFSQQELRKRLTPLQYHVTQEKGTE              
                     GSCRDKKNCKVVFSQQELRKRLTPLQYHVTQEKGTE              
LZPO01075874.1:50000 gttagaaataggttccgcaaccaccctcgacgagag              
                     gcggaaaagatttcaaatgagtcctaaatcaaagca              
                     gatgtagctggcccggagggcgaccgccctggagga              


SPP00001584_2.0   64                           AFEGEYTHHKDPGIYKCVVCGTP 
                                               AFEGEYTHHKDPGIYKCVVCGTP 
                                S:S[agt]       AFEGEYTHHKDPGIYKCVVCGTP 
LZPO01075874.1:50108 AGGTAATGT  Intron 1   CAGTgtgggtaccagcgatatggtgac 
                       <2-----[50110:51713]-2> ctagaacaaaacgtaagttggcc 
                                               ttaaacgccattaatattttata 


SPP00001584_2.0   88 LF                          SETKFDSGS             
                     LF                          SETKFDSGS             
                     LF           K:K[aaa]       SETKFDSGS             
LZPO01075874.1:51784 ttAAGTAAGTG  Intron 2   CAGAtgaatgtgt             
                     tt  <2-----[51792:82664]-2> cacatacgc             
                     gc                          aacatctta             


SPP00001584_2.0  100                           WPAFHDVISSEAIEFTDDFSYGM 
                                               WP+FHDVISSEAIEFTDDFS+G+ 
                               G:G[ggt]        WPSFHDVISSEAIEFTDDFSHGL 
LZPO01075874.1:82693 GGTATGTT  Intron 3   CAGGTtcttcggaatggagtaggttcgc 
                      <1-----[82694:126179-1>  gcctaattgcactatcaatcagt 
                                               gtcttcgcttgccgcacttctga 


SPP00001584_2.0  124 HRVETSCSQ                       CGAHLGHIFDDGPRPTG 
                     HRVETSCSQ                       CGAHLGHIFDDGPRPTG 
                     HRVETSCSQ                       CGAHLGHIFDDGPRPTG 
LZPO01075874.1126251 caggaattcGTGAGTT  Intron 4   CAGtggccgcatgggcccag 
                     agtacggca<0-----[126278:13300-0>ggcatgattaagcgccg 
                     cggaacttg                       tttttgcttttattgcc 


SPP00001584_2.0  150 KRYCINSASLSFTPADSSEAEGSGIKESGSPAAADRAEL           
                     KRYCINSASLSFTP DSSEAEG + +E+G+PA+ADRAEL           
                     KRYCINSASLSFTPTDSSEAEGGxGRENGNPASADRAEL           
LZPO01075874.1133061 aattaatgttttacagaagggggNgagagacgtggaggc           
                     agagtaccctctcccaggacagggggaagaccccagcat           
                     aaccctgccgtcgcacctgaaactcagcccaaaacaggg           


//
Making a S in phase 2 intron
Making a K in phase 2 intron
Making a G in phase 1 intron
>LZPO01075874.1:subseq(10417,183177).pep
GSCRDKKNCKVVFSQQELRKRLTPLQYHVTQEKGTESAFEGEYTHHKDPGIYKCVVCGTP
LFKSETKFDSGSGWPSFHDVISSEAIEFTDDFSHGLHRVETSCSQCGAHLGHIFDDGPRP
TGKRYCINSASLSFTPTDSSEAEGGxGRENGNPASADRAEL
//
>LZPO01075874.1:subseq(10417,183177).[50000:133177].sp
GGGTCATGTAGGGATAAAAAGAACTGTAAGGTGGTCTTCTCCCAGCAGGAACTGAGGAAG
CGCCTGACACCCCTCCAGTACCACGTCACTCAGGAGAAAGGGACGGAAAGTGCTTTTGAA
GGAGAATACACGCACCACAAAGATCCTGGAATATATAAATGTGTTGTTTGTGGAACTCCA
TTGTTCAAATCAGAAACCAAATTTGACTCTGGTTCAGGTTGGCCTTCCTTTCATGACGTG
ATCAGTTCTGAGGCCATCGAGTTCACAGACGATTTTTCCCATGGGCTACACAGGGTGGAA
ACAAGCTGTTCTCAGTGTGGTGCTCATCTTGGGCACATTTTTGATGATGGACCTCGTCCG
ACCGGCAAAAGATACTGCATCAATTCGGCCTCCTTGTCTTTCACGCCCACAGACAGCAGT
GAGGCAGAAGGAGGCNGTGGCAGAGAGAACGGCAACCCAGCATCAGCAGACAGAGCGGAG
CTG
//
LZPO01075874.1:subseq(10417,183177)	GeneWise	match	50000	133177	330.56	+	.	LZPO01075874.1:subseq(10417,183177)-genewise-prediction-1
LZPO01075874.1:subseq(10417,183177)	GeneWise	cds	50000	50109	0.00	+	0	LZPO01075874.1:subseq(10417,183177)-genewise-prediction-1
LZPO01075874.1:subseq(10417,183177)	GeneWise	intron	50110	51713	0.00	+	.	LZPO01075874.1:subseq(10417,183177)-genewise-prediction-1
LZPO01075874.1:subseq(10417,183177)	GeneWise	cds	51714	51791	0.00	+	1	LZPO01075874.1:subseq(10417,183177)-genewise-prediction-1
LZPO01075874.1:subseq(10417,183177)	GeneWise	intron	51792	82664	0.00	+	.	LZPO01075874.1:subseq(10417,183177)-genewise-prediction-1
LZPO01075874.1:subseq(10417,183177)	GeneWise	cds	82665	82693	0.00	+	1	LZPO01075874.1:subseq(10417,183177)-genewise-prediction-1
LZPO01075874.1:subseq(10417,183177)	GeneWise	intron	82694	126179	0.00	+	.	LZPO01075874.1:subseq(10417,183177)-genewise-prediction-1
LZPO01075874.1:subseq(10417,183177)	GeneWise	cds	126180	126277	0.00	+	2	LZPO01075874.1:subseq(10417,183177)-genewise-prediction-1
LZPO01075874.1:subseq(10417,183177)	GeneWise	intron	126278	133009	0.00	+	.	LZPO01075874.1:subseq(10417,183177)-genewise-prediction-1
LZPO01075874.1:subseq(10417,183177)	GeneWise	cds	133010	133177	0.00	+	0	LZPO01075874.1:subseq(10417,183177)-genewise-prediction-1
//
