
genewise output
Score 870.07 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
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SPP00001579_2.0   41 TGSVPVANYEEEELPHDPSEETLTIEARFQPLLMETMTKSKDGFLG    
                     TGSVPVA YEEEEL HDPSEETLTIEARFQPLL ETMTKSKDGFLG    
                     TGSVPVATYEEEELHHDPSEETLTIEARFQPLLTETMTKSKDGFLG    
LZPO01099511.1:50000 agtgcggatggggcccgcaggacaaggctccccagaaaaaaggtcg    
                     cgctctccaaaaataaacgaactctacgtacttcactcagaagttg    
                     agattgcctgggagctcccggtccaatacgtgcagtgcacatccag    


SPP00001579_2.0   87                        VSRLALSGLRNWTTAASPSAAFAARH 
                                            VSRLALSGLRNWTTAASP+A FAARH 
                                            VSRLALSGLRNWTTAASPTAVFAARH 
LZPO01099511.1:50138 GTGAGTC  Intron 1   CAGgtccgctgccataaggtcaggtggcc 
                     <0-----[50138:52491]-0>tcgtctcgtgagccccccccttccga 
                                            cccctgaccccggtccaatagttccc 


SPP00001579_2.0  113 FRPFLPPPGQELGQPWWIIPGELSVFTGYLSNNRFYPPPPKGKE      
                     FRPFLPPPGQ+LGQPWWIIPGELSVFTGYLSNNRFYPPPPK KE      
                     FRPFLPPPGQxLGQPWWIIPGELSVFTGYLSNNRFYPPPPKDKE      
LZPO01099511.1:52570 tcctccccgcgcgccttaacggcagtagtttaacttccccagag      
                     tgcttcccgaatgacggttcgatgttcgatcaagtaccccaaaa      
                     cgccgctatgNgcgcggtctaggtccactgccccccaggcacgg      


SPP00001579_2.0  157                        VIIHRLLSMFHPRPFVKTRFAPQGTV 
                                            VIIH+LLSMFHPRPFVKTRFAPQGTV 
                                            VIIHxLLSMFHPRPFVKTRFAPQGTV 
LZPO01099511.1:52702 GTAAGGA  Intron 2   TAGgaaccccaatcccctgaactgccgag 
                     <0-----[52702:52885]-0>tttagttgttacgcttacgtccagct 
                                            ccccNagcgtcacccggcctctgctg 


SPP00001579_2.0  183 ACLTAISDSYYTVMF                          IHAEFQLS 
                     ACLTAISDSYYTVMF                          IHAEFQLS 
                     ACLTAISDSYYTVMF           R:R[cgg]       IHAEFQLS 
LZPO01099511.1:52964 gtcagaagtttagatCGGTGAGTG  Intron 3   CAGGacggtcca 
                     cgtcctgacaacttt  <2-----[53011:53471]-2> tacatatg 
                     ccattctcccctggc                          cttgcgct 


SPP00001579_2.0  207 EPPDFPFWFSPGQFTGHIILSKDATHIRDFRLFVPNH             
                     EPPDFPFWFSPGQFTGHIILSKDATHIRDFR+FVPNH             
                     EPPDFPFWFSPGQFTGHIILSKDATHIRDFRxFVPNH             
LZPO01099511.1:53497 gccgtcttttcgctagcaattaggacacgtcctgcac             
                     accatctgtccgatcgatttcaaccatgatgtttcaa             
                     gtttcccgcatcgccccccgcattacctccgNcgctc             


SPP00001579_2.0  244                           SLNVDMEWLYGASETSNMEVDIG 
                                               SLNVDMEWLYGASETSNMEVDIG 
                                R:R[agg]       SLNVDMEWLYGASETSNMEVDIG 
LZPO01099511.1:53608 AGGTAGGAG  Intron 4   CAGGtcaggagtctggagaaaagggag 
                       <2-----[53610:55090]-2> ctatatagtagcgacgatatatg 
                                               cgtgcggggtgctgcccgggccc 


SPP00001579_2.0  268 YVPQ                       MELEAVGPSVPSVILDEDGNMI 
                     Y+PQ                       MELEA GPSVPSVILDEDGNMI 
                     YIPQ                       MELEARGPSVPSVILDEDGNMI 
LZPO01099511.1:55161 taccGTGAACA  Intron 5   CAGagcggagctgctgacggggaaa 
                     atca<0-----[55173:55320]-0>tatacggcctcctttaaagatt 
                     cacg                       ggggcgccagctgcgtgtccgt 


SPP00001579_2.0  294 DSRLPSGEPLQFVFEEIKWHQELSWEEAARRLEVAMYPFKK         
                     DSRLPSGEPLQFVFEEIKWHQELSWEEAARRLEVAMYPFKK         
                     DSRLPSGEPLQFVFEEIKWHQELSWEEAARRLEVAMYPFKK         
LZPO01099511.1:55387 gaccctggccctgtggaatccgcatggggcccgggatctaa         
                     aggtccgactatttaatagaaatggaaccggtatctactaa         
                     cccgcgaaccgcgtggcggcgagcggatcgcaggcgcccgg         


SPP00001579_2.0  335                        VNYLPFTEAFDRARAEKKLVHSILLW 
                                            VNYLPFTEAFDRA+AE KLVHSILLW 
                                            VNYLPFTEAFDRAKAENKLVHSILLW 
LZPO01099511.1:55510 GTGAGGC  Intron 6   CAGgatcctaggtgagaggaacgctatct 
                     <0-----[55510:55804]-0>taatctcactagcacaaattactttg 
                                            cccgacgactcgcgcgcatgtccggg 


SPP00001579_2.0  361 GALDDQSCU                          SGRTLRETVLESPP 
                     GALDDQSC                           SGRTLRETVLESPP 
                     GALDDQSCX          G:G[ggt]        SGRTLRETVLESPP 
LZPO01099511.1:55883 ggcggctttGGTGAGGA  Intron 7   CAGGTtgcaccgagcgacc 
                     gctaaacgg <1-----[55911:56975]-1>  cggctgacttagcc 
                     tcgccgcca                          aggtcggtcgacgc 


SPP00001579_2.0  385 ILTLLNESFISTWSLVKELEDLQTQQ                        
                     ILTLLNESFISTWSLVKELEDLQ  +                        
                     ILTLLNESFISTWSLVKELEDLQVSK           E:G[gga]     
LZPO01099511.1:57020 acaccagataaattcgagcggccgaaGGGTCAGGG  Intron 8     
                     ttcttaagttgcgcttaataatatga  <2-----[57100:58343]  
                     cccgctgccctcgcgagagacgggcg                        


SPP00001579_2.0  411     NPLHRQLAGLHLEKYSFPVEMMICLPNGTVVHHINANYFLDITSM 
                           L  + +G     + +P  +++  P    VHHINANYFLDITSM 
                         VKLVMRWSG---QMWPLPSPVLLTQPF-PQVHHINANYFLDITSM 
LZPO01099511.1:58341 CAGAgacgaattg   catctctcgccacct ccgccaagattcgaata 
                     -2> tatttggcg   atgctccctttcact cataatacaattatcct 
                         gggggagtg   gggtgccatcccgcc cgcccccccccgccccg 


SPP00001579_2.0  457 KPEDMENNNVFSFSSSFEDPSTATYMQFLREGLRRGLPLLQP        
                     KPED+E NNVFSFSS+FEDPSTATYMQFLREGLRRGLPLLQP        
                     KPEDVE-NNVFSFSSTFEDPSTATYMQFLREGLRRGLPLLQP        
LZPO01099511.1:58468 acgggg aagtatttatggctagatactcaggcccgcccccc        
                     acaata aattgtccctaacccccatattgagtgggtcttac        
                     gtatgg ctcctcaactgcacacccggcggaacgtcgcccgc        


//
Making a R in phase 2 intron
Making a R in phase 2 intron
Making a G in phase 1 intron
Making a G in phase 2 intron
>LZPO01099511.1:subseq(2142666,108548).pep
TGSVPVATYEEEELHHDPSEETLTIEARFQPLLTETMTKSKDGFLGVSRLALSGLRNWTT
AASPTAVFAARHFRPFLPPPGQxLGQPWWIIPGELSVFTGYLSNNRFYPPPPKDKEVIIH
xLLSMFHPRPFVKTRFAPQGTVACLTAISDSYYTVMFRIHAEFQLSEPPDFPFWFSPGQF
TGHIILSKDATHIRDFRxFVPNHRSLNVDMEWLYGASETSNMEVDIGYIPQMELEARGPS
VPSVILDEDGNMIDSRLPSGEPLQFVFEEIKWHQELSWEEAARRLEVAMYPFKKVNYLPF
TEAFDRAKAENKLVHSILLWGALDDQSCXGSGRTLRETVLESPPILTLLNESFISTWSLV
KELEDLQVSKGVKLVMRWSGQMWPLPSPVLLTQPFPQVHHINANYFLDITSMKPEDVENN
VFSFSSTFEDPSTATYMQFLREGLRRGLPLLQP
//
>LZPO01099511.1:subseq(2142666,108548).[50000:58590].sp
ACAGGGTCAGTTCCTGTGGCCACCTATGAGGAGGAGGAACTGCACCATGACCCCAGCGAG
GAGACTCTCACCATAGAAGCTCGATTCCAGCCTCTGCTCACAGAGACTATGACCAAAAGC
AAAGATGGCTTCCTAGGGGTCTCCCGCCTCGCTCTGTCAGGCCTCCGCAACTGGACGACT
GCCGCCTCACCAACTGCAGTGTTTGCTGCCCGCCACTTCCGGCCCTTCCTGCCCCCTCCA
GGTCAGGANCTGGGCCAGCCCTGGTGGATTATCCCTGGAGAGCTGAGTGTCTTCACAGGC
TATTTGTCCAACAACCGCTTCTACCCACCGCCGCCCAAAGACAAGGAGGTCATCATCCAC
CGNCTACTGAGCATGTTTCACCCACGCCCCTTCGTGAAGACCCGCTTTGCCCCTCAGGGC
ACTGTGGCCTGCCTAACTGCTATCAGTGACTCCTACTACACTGTGATGTTCCGGATCCAT
GCTGAGTTCCAGCTCAGTGAGCCTCCTGATTTCCCCTTCTGGTTCTCACCTGGCCAGTTC
ACCGGCCACATCATCTTGTCCAAAGATGCTACACACATCCGTGACTTCCGGCTNTTCGTG
CCCAATCACAGGTCCCTGAATGTGGACATGGAGTGGCTGTATGGGGCCAGTGAGACCAGC
AACATGGAGGTGGACATCGGCTACATACCCCAGATGGAGCTGGAGGCCAGGGGCCCCTCA
GTGCCCTCTGTGATCCTGGATGAGGATGGCAACATGATTGACAGCCGCCTGCCCTCGGGA
GAACCCCTCCAGTTCGTGTTTGAGGAGATCAAGTGGCACCAGGAACTGAGCTGGGAGGAA
GCTGCCCGGCGCCTAGAGGTGGCCATGTACCCCTTCAAGAAGGTCAACTACCTGCCATTC
ACGGAAGCCTTTGACAGGGCCAAGGCCGAGAACAAACTTGTGCATTCCATCTTGCTGTGG
GGTGCCCTGGACGACCAGTCCTGCTGAGGTTCAGGGCGGACTCTCCGGGAGACTGTCCTG
GAAAGCCCGCCCATCCTCACCCTGCTCAATGAGAGCTTCATCAGTACCTGGTCCCTGGTA
AAGGAACTGGAAGACCTGCAGGTGAGCAAGGGAGTGAAGCTGGTGATGAGATGGTCTGGG
CAGATGTGGCCTTTGCCCTCCCCAGTTCTCCTCACCCAGCCCTTCCCCCAGGTCCACCAC
ATCAACGCCAACTACTTCCTGGACATCACCTCCATGAAGCCTGAAGATGTGGAGAACAAT
GTCTTCAGTTTCTCATCAACCTTTGAGGACCCATCCACAGCCACCTACATGCAGTTCCTG
AGGGAAGGACTCCGGCGTGGCCTGCCCCTCCTCCAGCCC
//
LZPO01099511.1:subseq(2142666,108548)	GeneWise	match	50000	58590	872.06	+	.	LZPO01099511.1:subseq(2142666,108548)-genewise-prediction-1
LZPO01099511.1:subseq(2142666,108548)	GeneWise	cds	50000	50137	0.00	+	0	LZPO01099511.1:subseq(2142666,108548)-genewise-prediction-1
LZPO01099511.1:subseq(2142666,108548)	GeneWise	intron	50138	52491	0.00	+	.	LZPO01099511.1:subseq(2142666,108548)-genewise-prediction-1
LZPO01099511.1:subseq(2142666,108548)	GeneWise	cds	52492	52701	0.00	+	0	LZPO01099511.1:subseq(2142666,108548)-genewise-prediction-1
LZPO01099511.1:subseq(2142666,108548)	GeneWise	intron	52702	52885	0.00	+	.	LZPO01099511.1:subseq(2142666,108548)-genewise-prediction-1
LZPO01099511.1:subseq(2142666,108548)	GeneWise	cds	52886	53010	0.00	+	0	LZPO01099511.1:subseq(2142666,108548)-genewise-prediction-1
LZPO01099511.1:subseq(2142666,108548)	GeneWise	intron	53011	53471	0.00	+	.	LZPO01099511.1:subseq(2142666,108548)-genewise-prediction-1
LZPO01099511.1:subseq(2142666,108548)	GeneWise	cds	53472	53609	0.00	+	1	LZPO01099511.1:subseq(2142666,108548)-genewise-prediction-1
LZPO01099511.1:subseq(2142666,108548)	GeneWise	intron	53610	55090	0.00	+	.	LZPO01099511.1:subseq(2142666,108548)-genewise-prediction-1
LZPO01099511.1:subseq(2142666,108548)	GeneWise	cds	55091	55172	0.00	+	1	LZPO01099511.1:subseq(2142666,108548)-genewise-prediction-1
LZPO01099511.1:subseq(2142666,108548)	GeneWise	intron	55173	55320	0.00	+	.	LZPO01099511.1:subseq(2142666,108548)-genewise-prediction-1
LZPO01099511.1:subseq(2142666,108548)	GeneWise	cds	55321	55509	0.00	+	0	LZPO01099511.1:subseq(2142666,108548)-genewise-prediction-1
LZPO01099511.1:subseq(2142666,108548)	GeneWise	intron	55510	55804	0.00	+	.	LZPO01099511.1:subseq(2142666,108548)-genewise-prediction-1
LZPO01099511.1:subseq(2142666,108548)	GeneWise	cds	55805	55910	0.00	+	0	LZPO01099511.1:subseq(2142666,108548)-genewise-prediction-1
LZPO01099511.1:subseq(2142666,108548)	GeneWise	intron	55911	56975	0.00	+	.	LZPO01099511.1:subseq(2142666,108548)-genewise-prediction-1
LZPO01099511.1:subseq(2142666,108548)	GeneWise	cds	56976	57099	0.00	+	2	LZPO01099511.1:subseq(2142666,108548)-genewise-prediction-1
LZPO01099511.1:subseq(2142666,108548)	GeneWise	intron	57100	58343	0.00	+	.	LZPO01099511.1:subseq(2142666,108548)-genewise-prediction-1
LZPO01099511.1:subseq(2142666,108548)	GeneWise	cds	58344	58590	0.00	+	1	LZPO01099511.1:subseq(2142666,108548)-genewise-prediction-1
//
