
genewise output
Score 634.22 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
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SPP00001577_2.0    1 MAGYEYVSPEQLSGFDKYK                       YSALDTN 
                     MAGYEYVSPEQL+GFDKYK                       YSALDTN 
                     MAGYEYVSPEQLAGFDKYK                       YSALDTN 
LZPO01066265.1-83924 aggtgtgacgccggtgataGTAGAGC  Intron 1   CAGtagtgaa 
                     tcgaaatgcaatcgtaaaa<0-----[83867:68609]-0>agctaca 
                     gtccacgcggggcctcgcg                       cttgtcc 


SPP00001577_2.0   27 PLSLYIMHPFWNTIVKVFPTWLAPNLITFSGFMLLVFNFLLLTYFDPDF 
                     PLSLY+MHPFWNTIVKV    L    +    F +L             F 
                     PLSLYVMHPFWNTIVKV--RLLVACFLFKQAFRILTHLTGSYCCCHSQF 
LZPO01066265.1-68587 cctctgaccttaaagag  attggttttacgtcataccagtttttctct 
                     ctctattactgacttat  gtttcgtttaactgttcatcgcagggacat 
                     gctgtcgcacgctagga  aagggctgtaattttatttagttcccctgt 


SPP00001577_2.0   76 YAS                          PGHKHVPDWVWIVVGILNFA 
                                                  PGHKHVPDWVWIVVGILNF  
                     IPF          A:T[aca]        PGHKHVPDWVWIVVGILNFV 
LZPO01066265.1-68446 actAGTTCTAG  Intron 2   CAGCAcgcacgcgtgtagggacatg 
                     tct <1-----[68436:66374]-1>  cgaaatcagtgtttgttatt 
                     ttt                          gtcgtattgtgttgccccta 


SPP00001577_2.0  100 AYTL                          GVDGKQARRTNSSTPLGEL 
                     AYTL                          GVDGKQARRTNSSTPLGEL 
                     AYTL          D:D[gat]        GVDGKQARRTNSSTPLGEL 
LZPO01066265.1-66311 gtacGGTAAGAA  Intron 3   CAGATggggacgcaaataactggc 
                     cact <1-----[66298:62488]-1>  gtagaacggcacgcctgat 
                     ccta                          aataagagactctctaggc 


SPP00001577_2.0  124 FDHGLDSWSCVYFVVTVYSIFGRGPTGVSVFVLYLLLWVVLFSFILSHW 
                     FDHGLDSWSCVYFVVTVYSIFGRGPTGV+VFVLYLLLWVVLFSFILSHW 
                     FDHGLDSWSCVYFVVTVYSIFGRGPTGVNVFVLYLLLWVVLFSFILSHW 
LZPO01066265.1-62428 tgcgcgatttgttggagttatgcgcaggagtgctccctggttttattct 
                     taagtaggcgtatttctacttgggccgtattttatttgttttctttcag 
                     tctcgtcgattcttgtgccctataattcttttttcgcgatgttccgtcg 


SPP00001577_2.0  173 EKYNTGVLFLPWGYDISQV                       TISFVYI 
                     EKYNTG+LFLPWGYDISQV                       TISFVYI 
                     EKYNTGILFLPWGYDISQV                       TISFVYI 
LZPO01066265.1-62281 gataagactcctgtgaacgGTAAGTA  Intron 4   CAGaattgta 
                     aaaacgttttcggaatgat<0-----[62224:60847]-0>ctcttat 
                     agtcacttctcgatctcag                       ttttcca 


SPP00001577_2.0  199 VTAVVGVEAWYEPFLFNFLYRDLFTAMII                     
                     VTAVVGVEAWYEPFLFNFLYRDLFTAMII                     
                     VTAVVGVEAWYEPFLFNFLYRDLFTAMII                     
LZPO01066265.1-60825 gagggggggttgctctatttagctagaaa                     
                     tccttgtacgaactttattagattccttt                     
                     gtaggatgcgtatcgttcatacactagtt                     


SPP00001577_2.0  228                           CALCVTLPMSLLNFFRSYKSNTL 
                                                 LC+     +  FFRSYKSNTL 
                               G:V[gtg]        LVLCLICNDVVYXFFRSYKSNTL 
LZPO01066265.1-60738 GGTAAGGA  Intron 5   AAGTGtgttcatagggttttaataaaac 
                      <1-----[60737:54583]-1>  tttgttgaattagttggaagact 
                                               acgttattttgcatcatcgcccg 


SPP00001577_2.0  252 KHKSVYEAMVPFFSPCLLFTLCTVWILWSPSDILEIHPRIFYFMVGTAF 
                     KH SVYEAMVP+FSPCLLF L TVWIL SPSDILEIHPRIFYFMVGTAF 
                     KHNSVYEAMVPLFSPCLLFALSTVWILRSPSDILEIHPRIFYFMVGTAF 
LZPO01066265.1-54511 acatgtggagccttcttctgttagtacctctgatgaccaatttaggagt 
                     aaactaacttcttccgtttctcctgttgcccattatacgttatttgcct 
                     actcgtacgcccctacgcccgtaggccgttattaacctaacccgtgatt 


SPP00001577_2.0  301 ANIT                       CQLIVCQMSSTRCPTLNWLLLP 
                     ANIT                       C+LIVCQMSSTRCPTLNWLLLP 
                     ANIT                       CKLIVCQMSSTRCPTLNWLLLP 
LZPO01066265.1-54364 gaaaGTAAGAC  Intron 6   AAGtacagtcaaaactcatattccc 
                     catc<0-----[54352:53466]-0>gatttgatggcggcctagtttc 
                     ctca                       tgactcagcctgcatgcgggtt 


SPP00001577_2.0  327 LLLVVAAVIVGAATSRLESALLYTLTAAFTLAHIHYGVQV          
                     L LVVA V VGAA S LES LL+ LTAAFTLAHIHYGVQV          
                     LFLVVATVSVGAAASHLESLLLHALTAAFTLAHIHYGVQV          
LZPO01066265.1-53399 cttgggagagggggtccgaccccgcaggtacgcactggcg          
                     tttttcctgtgccccatagtttactccctctcataagtat          
                     ccgtgcagcataacccggttctcgcaacctgtccccaaag          


SPP00001577_2.0  367                        VKQLSRHFQIYPFSLRKPNSDULGME 
                                            VKQLS HFQIYPFSLRKPNSD LGME 
                                            VKQLSSHFQIYPFSLRKPNSDXLGME 
LZPO01066265.1-53279 GTGAGTA  Intron 7   TAGgaccaactcatcttcaacatgtcgag 
                     <0-----[53279:50096]-0>taatggatatactctgacacagtgta 
                                            ggggccttgtcctaggaacacaaaga 


SPP00001577_2.0  393 EQNIGL                                            
                     E+N+GL                                            
                     EKNVGL                                            
LZPO01066265.1-50017 gaaggc                                            
                     aaatgt                                            
                     ggcccg                                            


//
Making a T in phase 1 intron
Making a D in phase 1 intron
Making a V in phase 1 intron
>LZPO01066265.1:subseq(593146,118632).pep
MAGYEYVSPEQLAGFDKYKYSALDTNPLSLYVMHPFWNTIVKVRLLVACFLFKQAFRILT
HLTGSYCCCHSQFIPFTPGHKHVPDWVWIVVGILNFVAYTLDGVDGKQARRTNSSTPLGE
LFDHGLDSWSCVYFVVTVYSIFGRGPTGVNVFVLYLLLWVVLFSFILSHWEKYNTGILFL
PWGYDISQVTISFVYIVTAVVGVEAWYEPFLFNFLYRDLFTAMIIVLVLCLICNDVVYXF
FRSYKSNTLKHNSVYEAMVPLFSPCLLFALSTVWILRSPSDILEIHPRIFYFMVGTAFAN
ITCKLIVCQMSSTRCPTLNWLLLPLFLVVATVSVGAAASHLESLLLHALTAAFTLAHIHY
GVQVVKQLSSHFQIYPFSLRKPNSDXLGMEEKNVGL
//
>LZPO01066265.1:subseq(593146,118632).[83924:49998].sp
ATGGCTGGCTACGAATACGTGAGCCCGGAGCAGCTGGCCGGCTTTGACAAGTACAAGTAC
AGTGCTTTGGATACCAACCCGCTCTCTCTGTATGTCATGCACCCATTCTGGAACACTATA
GTGAAGGTAAGATTATTGGTGGCGTGCTTTTTGTTTAAACAAGCTTTTCGTATTTTAACT
CATCTTACAGGGTCTTATTGCTGCTGCCACTCTCAGTTTATTCCTTTTACACCGGGTCAC
AAGCATGTACCTGATTGGGTTTGGATTGTTGTGGGCATCCTCAACTTTGTAGCCTACACT
CTAGATGGAGTAGATGGAAAACAGGCACGGAGAACCAATTCCAGTACCCCTTTAGGGGAG
CTCTTTGACCATGGCCTGGATAGCTGGTCATGTGTTTACTTTGTTGTGACTGTGTACTCC
ATCTTTGGACGTGGACCAACTGGTGTCAATGTTTTTGTTCTTTATCTCCTGCTCTGGGTA
GTTTTGTTTTCTTTCATCTTGTCTCACTGGGAAAAGTATAACACAGGCATTCTTTTCCTT
CCCTGGGGATATGACATTAGCCAAGTGACTATTTCTTTTGTCTACATAGTGACTGCAGTG
GTGGGAGTTGAGGCCTGGTATGAACCTTTCCTGTTTAATTTCTTATATAGAGACCTATTC
ACTGCAATGATTATTGTGTTAGTCTTGTGTCTTATATGTAATGATGTTGTGTACTGATTT
TTCAGAAGTTACAAGAGCAACACCCTGAAACACAATTCCGTGTATGAAGCCATGGTCCCC
CTCTTCTCTCCATGCTTGCTCTTCGCCTTGTCTACAGTGTGGATCCTCCGGTCTCCTTCA
GATATTTTAGAAATCCACCCTAGAATATTCTACTTCATGGTTGGGACAGCTTTTGCCAAT
ATCACATGTAAGCTAATCGTTTGCCAAATGAGCAGCACTCGGTGCCCAACTTTGAACTGG
TTGCTGCTTCCTCTCTTCTTGGTTGTGGCCACAGTGAGCGTAGGTGCAGCAGCCTCCCAC
CTGGAGAGTCTTCTCCTTCACGCGCTCACAGCAGCCTTCACTCTGGCTCACATCCACTAC
GGAGTACAAGTGGTGAAGCAGCTGAGCAGCCATTTTCAGATTTACCCCTTTTCACTGAGG
AAACCAAACTCAGACTGACTAGGAATGGAAGAGAAGAACGTCGGCCTG
//
LZPO01066265.1:subseq(593146,118632)	GeneWise	match	83924	50000	635.22	-	.	LZPO01066265.1:subseq(593146,118632)-genewise-prediction-1
LZPO01066265.1:subseq(593146,118632)	GeneWise	cds	83924	83868	0.00	-	0	LZPO01066265.1:subseq(593146,118632)-genewise-prediction-1
LZPO01066265.1:subseq(593146,118632)	GeneWise	intron	83867	68609	0.00	-	.	LZPO01066265.1:subseq(593146,118632)-genewise-prediction-1
LZPO01066265.1:subseq(593146,118632)	GeneWise	cds	68608	68437	0.00	-	0	LZPO01066265.1:subseq(593146,118632)-genewise-prediction-1
LZPO01066265.1:subseq(593146,118632)	GeneWise	intron	68436	66374	0.00	-	.	LZPO01066265.1:subseq(593146,118632)-genewise-prediction-1
LZPO01066265.1:subseq(593146,118632)	GeneWise	cds	66373	66299	0.00	-	2	LZPO01066265.1:subseq(593146,118632)-genewise-prediction-1
LZPO01066265.1:subseq(593146,118632)	GeneWise	intron	66298	62488	0.00	-	.	LZPO01066265.1:subseq(593146,118632)-genewise-prediction-1
LZPO01066265.1:subseq(593146,118632)	GeneWise	cds	62487	62225	0.00	-	2	LZPO01066265.1:subseq(593146,118632)-genewise-prediction-1
LZPO01066265.1:subseq(593146,118632)	GeneWise	intron	62224	60847	0.00	-	.	LZPO01066265.1:subseq(593146,118632)-genewise-prediction-1
LZPO01066265.1:subseq(593146,118632)	GeneWise	cds	60846	60738	0.00	-	0	LZPO01066265.1:subseq(593146,118632)-genewise-prediction-1
LZPO01066265.1:subseq(593146,118632)	GeneWise	intron	60737	54583	0.00	-	.	LZPO01066265.1:subseq(593146,118632)-genewise-prediction-1
LZPO01066265.1:subseq(593146,118632)	GeneWise	cds	54582	54353	0.00	-	2	LZPO01066265.1:subseq(593146,118632)-genewise-prediction-1
LZPO01066265.1:subseq(593146,118632)	GeneWise	intron	54352	53466	0.00	-	.	LZPO01066265.1:subseq(593146,118632)-genewise-prediction-1
LZPO01066265.1:subseq(593146,118632)	GeneWise	cds	53465	53280	0.00	-	0	LZPO01066265.1:subseq(593146,118632)-genewise-prediction-1
LZPO01066265.1:subseq(593146,118632)	GeneWise	intron	53279	50096	0.00	-	.	LZPO01066265.1:subseq(593146,118632)-genewise-prediction-1
LZPO01066265.1:subseq(593146,118632)	GeneWise	cds	50095	50000	0.00	-	0	LZPO01066265.1:subseq(593146,118632)-genewise-prediction-1
//
