
genewise output
Score 195.50 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
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SPP00001576_2.0    1 MAPHGRKRKAGAAPMETVDKREKLAEGATVVIEH                
                     MAP GRKRKA  AP ETVDKREKLAEG  VVIEH                
                     MAPVGRKRKA--APAETVDKREKLAEGPAVVIEH                
LZPO01027497.1-50549 agcggaacag  gcggaggacgacgggcgggagc                
                     tcctggagac  cccactaagaatcagcctttaa                
                     gctcaagggt  ggagagcgcgagcgcgggctgt                


SPP00001576_2.0   35                           TSURVYGRHAAALSQALQLEAPE 
                                               TS RVYGRHAAALSQALQLE PE 
                                C:C[tgc]       TSXRVYGRHAAALSQALQLEVPE 
LZPO01027497.1-50453 TGGTGAGGG  Intron 1   CAGCaatcgtgccgggcacgcccggcg 
                       <2-----[50451:50362]-2> cgggtaggaccctgactatatca 
                                               gcacccgctttcgcgtggggcag 


SPP00001576_2.0   59 LPVQVNPSKPRRGSFEVTLLRSDNS                         
                     LPVQVNPSKPRRGSFEVTLLR DNS                         
                     LPVQVNPSKPRRGSFEVTLLRPDNS          R:R[cgt]       
LZPO01027497.1-50291 ccgcgactaccagatggaccccgaaCGTGAGTG  Intron 2       
                     tctataccacggggtatcttgcaag <1-----[50215:50098]    
                     ctgggcacggggcccgggggcgccc                         


SPP00001576_2.0   84      VELWTGIKKGPPRKLKFPEPQEVVEELKKYLS             
                           ELWTGIKKGPPRKLKFPEPQEVV+ELKKYLS             
                          AELWTGIKKGPPRKLKFPEPQEVVKELKKYLS             
LZPO01027497.1-50100 CAGGTggctagaaagcccacatcgccgggagtaatct             
                     -1>  catgcgtaagccgatatcacaattaataaatc             
                          cacgtttggcgaagcattgtaggtaagggcta             


//
Making a C in phase 2 intron
Making a R in phase 1 intron
>LZPO01027497.1:subseq(20059,100549).pep
MAPVGRKRKAAPAETVDKREKLAEGPAVVIEHCTSXRVYGRHAAALSQALQLEVPELPVQ
VNPSKPRRGSFEVTLLRPDNSRAELWTGIKKGPPRKLKFPEPQEVVKELKKYLS
//
>LZPO01027497.1:subseq(20059,100549).[50549:49998].sp
ATGGCCCCTGTCGGAAGAAAGCGGAAGGCTGCGCCGGCAGAGACAGTGGACAAGCGCGAG
AAACTGGCCGAGGGCCCGGCGGTGGTCATTGAGCATTGCACGAGCTGACGCGTCTACGGG
CGCCATGCTGCTGCCCTGAGCCAGGCTCTGCAGCTGGAGGTCCCAGAGCTCCCTGTGCAG
GTGAACCCATCCAAGCCGCGGAGGGGCAGCTTCGAGGTGACGCTGCTGCGCCCGGACAAC
AGCCGTGCCGAACTCTGGACTGGTATTAAGAAGGGCCCGCCACGAAAGCTCAAATTTCCT
GAGCCTCAAGAGGTGGTTAAAGAATTGAAGAAGTACCTTTCA
//
LZPO01027497.1:subseq(20059,100549)	GeneWise	match	50549	50000	196.50	-	.	LZPO01027497.1:subseq(20059,100549)-genewise-prediction-1
LZPO01027497.1:subseq(20059,100549)	GeneWise	cds	50549	50452	0.00	-	0	LZPO01027497.1:subseq(20059,100549)-genewise-prediction-1
LZPO01027497.1:subseq(20059,100549)	GeneWise	intron	50451	50362	0.00	-	.	LZPO01027497.1:subseq(20059,100549)-genewise-prediction-1
LZPO01027497.1:subseq(20059,100549)	GeneWise	cds	50361	50216	0.00	-	1	LZPO01027497.1:subseq(20059,100549)-genewise-prediction-1
LZPO01027497.1:subseq(20059,100549)	GeneWise	intron	50215	50098	0.00	-	.	LZPO01027497.1:subseq(20059,100549)-genewise-prediction-1
LZPO01027497.1:subseq(20059,100549)	GeneWise	cds	50097	50000	0.00	-	2	LZPO01027497.1:subseq(20059,100549)-genewise-prediction-1
//
