
genewise output
Score 179.82 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
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SPP00001559_2.0  434 KTSGKKSQVPVQLDLGGMLAALEKQQQQQHASHAKPSSRPVVFS      
                     K +GKK++ PVQLDLG MLAALEKQQQ   A +   ++RP+ +       
                     KAAGKKNKTPVQLDLGDMLAALEKQQQAMKARxI-TNTRPLAYP      
LZPO01044437.1:39443 agggaaaaacgccgtggacggcgacccgaagcca aaaaccgtc      
                     accgaaaacctatatgattcctaaaaactacgat cacgctcac      
                     actaagtactggatagcgattgggagaagaacNc cccaaggta      


SPP00001559_2.0  478                           VGAVPVLSKDASSSERGRRSSQM 
                                               V A    +KD +  +   RS    
                               -:A[gct]        VTAASFHTKDTADRKPLTRSQPC 
LZPO01044437.1:39572 GGTGATTC  Intron 1   CAGCTgaggttcaagaggaactaaacct 
                      <1-----[39573:43894]-1>  tcccctacaaccagactcggacg 
                                               ttatttctacctcagtacatgcc 


SPP00001559_2.0  501 KTPHNPLDSSAPLMKKGKQREIPKAKKPTSLKK                 
                         + LD ++   KKGK++EI K K+PT+LKK                 
                     LMSCHSLDITSSKAKKGKEKEIAKLKRPTALKK                 
LZPO01044437.1:43966 tattctcgaattagaagagagagataccagcaa                 
                     ttcgactatcccacaagaaaatcatagccctaa                 
                     ggctttgcttccaagagaggatagaaacggcag                 


SPP00001559_2.0  534                        IILKERQERMQQ-RLQESAVSLTVAS 
                                            +ILKER+E+  +  ++ S +     + 
                                            VILKEREEKKGRLTVEHSVLGAEEPT 
LZPO01044437.1:44065 GTAACCC  Intron 2   CAGgatagaggaagccaggcagtggggca 
                     <0-----[44065:45432]-0>tttaagaaaaggtctaagttgcaacc 
                                            ttgaaaggggatgtgacttgatggaa 


SPP00001559_2.0  559 DDSQDVESGASNQTPSQD                          ----N 
                     +   D+ +    +T SQ+                                
                     ETHLDLANDLPQETASQE          -:D[gat]        TGLSM 
LZPO01044437.1:45511 gactgcgagtccgagtcgGGTAAGGA  Intron 3   CAGATagcaa 
                     acatatcaatcaacccaa <1-----[45566:47147]-1>  cgtgt 
                     aatgctctcgtgatccga                          tagcg 


SPP00001559_2.0  578 PTGPEKTEESVSSTPVVEGESEEPAGTEFQRDPEACQPAPDSATFPKIH 
                     P+    +  S +S   +   S+    +     P A      S+T+ KIH 
                     PSDASLSPASQNSPYCMTPVSQGSPASSGIGSPMA------SSTITKIH 
LZPO01044437.1:47165 caggtctcgacatcttaacgtcgtcgatgagacag      ttaaaaac 
                     cgacctcccgaaccagtcctcagcccgcgtggctc      ccctcata 
                     ctctatccatgctgctgatgaactttttcagcaga      gagacacc 


SPP00001559_2.0  627 SRRFR                          YCSQMLSKEVDACVTGLL 
                     S+RFR                          YC+Q+LSKE+D CVT LL 
                     SKRFR           D:x[gan]       YCNQVLSKEIDECVTLLL 
LZPO01044437.1:47294 aaatcGAGTAAGTT  Intron 4   CAGNttacgctagaggtgaccc 
                     gagtg  <2-----[47311:49998]-2> agaattcaataagtcttt 
                     caata                          tttgtctaatcatgcctg 


SPP00001559_2.0  651 KELVRFQDRMYQKDPVKAKTKRRLVLGLREVLKHLKLRKLKCIIISPNC 
                     +ELV FQ+R+YQKDPV+AK +RRLV+GLREV KH+KL K+KC+IISPNC 
                     QELVSFQERIYQKDPVRAKARRRLVMGLREVTKHMKLNKIKCVIISPNC 
LZPO01044437.1:50054 cgcgatcgcatcagcgagagacccgagcaggaacaacaaaatgaatcat 
                     aattgtaagtaaaactgcacgggtttgtgatcaatataatagtttccag 
                     agtttcggcccggccgacacggggcgggggccgcgggcgcgtcctcact 


SPP00001559_2.0  700 EKTQSKG                                           
                     EK QSKG                                           
                     EKIQSKG                                           
LZPO01044437.1:50201 gaactag                                           
                     aatacag                                           
                     ggcgagt                                           


//
Making a A in phase 1 intron
Making a D in phase 1 intron
Making a x in phase 2 intron
>LZPO01044437.1:subseq(47563,100254).pep
KAAGKKNKTPVQLDLGDMLAALEKQQQAMKARxITNTRPLAYPAVTAASFHTKDTADRKP
LTRSQPCLMSCHSLDITSSKAKKGKEKEIAKLKRPTALKKVILKEREEKKGRLTVEHSVL
GAEEPTETHLDLANDLPQETASQEDTGLSMPSDASLSPASQNSPYCMTPVSQGSPASSGI
GSPMASSTITKIHSKRFRxYCNQVLSKEIDECVTLLLQELVSFQERIYQKDPVRAKARRR
LVMGLREVTKHMKLNKIKCVIISPNCEKIQSKG
//
>LZPO01044437.1:subseq(47563,100254).[39443:50221].sp
AAAGCCGCTGGAAAAAAGAATAAAACCCCTGTGCAGCTAGATTTAGGGGACATGCTAGCT
GCTCTGGAGAAGCAACAGCAAGCAATGAAAGCACGCCANATCACCAACACCAGACCACTG
GCGTATCCAGCTGTTACTGCAGCTTCTTTTCACACTAAAGACACCGCTGACAGAAAGCCT
TTAACCAGAAGTCAGCCCTGCTTGATGTCCTGTCATTCTCTGGACATTACTTCCTCCAAA
GCAAAGAAAGGGAAAGAGAAGGAAATTGCAAAGTTAAAACGACCCACGGCGCTCAAAAAG
GTTATTTTGAAAGAAAGAGAGGAGAAGAAGGGACGTCTGACTGTGGAACACAGTGTTTTG
GGAGCTGAGGAGCCAACAGAAACACATTTGGACCTTGCCAATGACTTGCCTCAGGAAACT
GCCTCCCAGGAAGATACTGGACTGAGCATGCCCAGTGACGCTTCACTTTCCCCCGCAAGT
CAGAACTCTCCGTACTGTATGACACCTGTGTCACAAGGCTCTCCTGCTAGTTCTGGCATA
GGGAGCCCAATGGCATCGTCAACGATAACCAAAATCCACAGCAAAAGATTTCGAGANTAT
TGTAATCAGGTTCTCTCTAAAGAAATTGACGAATGTGTGACCCTCCTTCTGCAAGAGCTT
GTTAGTTTCCAGGAGCGCATCTACCAGAAGGACCCCGTGAGAGCCAAAGCCAGGCGGCGG
CTGGTCATGGGGCTGAGGGAGGTCACCAAGCACATGAAGCTGAACAAGATCAAGTGTGTC
ATCATTTCCCCAAACTGTGAGAAGATCCAGTCAAAGGGT
//
LZPO01044437.1:subseq(47563,100254)	GeneWise	match	39443	50221	187.80	+	.	LZPO01044437.1:subseq(47563,100254)-genewise-prediction-1
LZPO01044437.1:subseq(47563,100254)	GeneWise	cds	39443	39572	0.00	+	0	LZPO01044437.1:subseq(47563,100254)-genewise-prediction-1
LZPO01044437.1:subseq(47563,100254)	GeneWise	intron	39573	43894	0.00	+	.	LZPO01044437.1:subseq(47563,100254)-genewise-prediction-1
LZPO01044437.1:subseq(47563,100254)	GeneWise	cds	43895	44064	0.00	+	2	LZPO01044437.1:subseq(47563,100254)-genewise-prediction-1
LZPO01044437.1:subseq(47563,100254)	GeneWise	intron	44065	45432	0.00	+	.	LZPO01044437.1:subseq(47563,100254)-genewise-prediction-1
LZPO01044437.1:subseq(47563,100254)	GeneWise	cds	45433	45565	0.00	+	0	LZPO01044437.1:subseq(47563,100254)-genewise-prediction-1
LZPO01044437.1:subseq(47563,100254)	GeneWise	intron	45566	47147	0.00	+	.	LZPO01044437.1:subseq(47563,100254)-genewise-prediction-1
LZPO01044437.1:subseq(47563,100254)	GeneWise	cds	47148	47310	0.00	+	2	LZPO01044437.1:subseq(47563,100254)-genewise-prediction-1
LZPO01044437.1:subseq(47563,100254)	GeneWise	intron	47311	49998	0.00	+	.	LZPO01044437.1:subseq(47563,100254)-genewise-prediction-1
LZPO01044437.1:subseq(47563,100254)	GeneWise	cds	49999	50221	0.00	+	1	LZPO01044437.1:subseq(47563,100254)-genewise-prediction-1
//
