
genewise output
Score 285.00 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00001550_2.0   29 KVDCNKGVTGTVYEYGANTIDGGEFVNFQQYAGKHILFVNVASFCGLTA 
                     +++C K V GT+Y+Y A  ++G E + F++Y GKH+LFVNVA++CGLT  
                     QMNCYKNVKGTIYDYEALALNGKERIEFKRYEGKHVLFVNVATYCGLTI 
LZPO01108088.1-54557 caattaagagaatgtggcgcagagcagtactggacgctgaggattgcaa 
                     atagaaatagctaaaactctagaagtatagaagaattttatccaggtct 
                     ggtccatgaccctccgtcttcggactgcggtacgtcctccgtctttgat 


SPP00001550_2.0   78 TYP                          LNTLQEELKPFNVTVLGFPC 
                      YP                          LN LQE+LKP  + VLGFPC 
                     QYP          E:E[gaa]        LNALQEDLKPSGLVVLGFPC 
LZPO01108088.1-54410 ctcGGTAAGAA  Intron 1   CAGAAcagccggtactgtggtgtct 
                     aac <1-----[54400:51920]-1>  tactaaataccgttttgtcg 
                     gct                          gtacggtggaccgtggttcc 


SPP00001550_2.0  102 NQFGKQEPGKNSEILLGL                          YVRPG 
                     NQFGKQEPG+N EIL GL                          YVRPG 
                     NQFGKQEPGENIEILPGL           K:K[aag]       YVRPG 
LZPO01108088.1-51857 actgacgcggaagaccgcAAGTAAGTA  Intron 2   TAGGtgccg 
                     aatgaaacgaatattcgt  <2-----[51801:51374]-2> atgcg 
                     cgtagaaaaatagtttcc                          tttaa 


SPP00001550_2.0  126 GGYVPNFQLFEKGDVNGDNEQKVFSFLK                      
                      GY+PNFQLF KGDVNG+ EQK+F+FLK                      
                     KGYIPNFQLFAKGDVNGEKEQKIFTFLK                      
LZPO01108088.1-51357 agtacatcctgagggaggagcaatattaGTGGGTG  Intron 3     
                     agatcatattcagatagaaaaattctta<0-----[51273:50207]  
                     aatattcgttgagtattagagaccccgg                      


SPP00001550_2.0  154    NSCPPTSELFGS-PEHLFWDPMKVHDIRWNFEKFLVGPDGVPVMRW 
                        +SCP  SE++    +H+ W+P+KVHDIRWNFEKFLVGPDGVPVMRW 
                        HSCPHPSEIISQRSKHVSWEPIKVHDIRWNFEKFLVGPDGVPVMRW 
LZPO01108088.1-50209 CAGcttccctgaatcatacgttgcaagcgactatgatcggcgggcgact 
                     -0>acgcaccattcagcaatcgactataatggataatttgcagtcttgg 
                        tcttccagtctgacatccgaaaactcccgctagccgactactcgcg 


SPP00001550_2.0  199 FHHTPVRIVQSDIMEYLNQTSTQ                           
                     FH  PV  V++DI+ YL Q  T+                           
                     FHQAPVSTVKADILAYLKQFKTK                           
LZPO01108088.1-50068 tccgcgaagaggacgtcactaaa                           
                     taacctgctacattcataataca                           
                     ccatacctcgttcgacggacacg                           


//
Making a E in phase 1 intron
Making a K in phase 2 intron
>LZPO01108088.1:subseq(16890,136304).pep
QMNCYKNVKGTIYDYEALALNGKERIEFKRYEGKHVLFVNVATYCGLTIQYPELNALQED
LKPSGLVVLGFPCNQFGKQEPGENIEILPGLKYVRPGKGYIPNFQLFAKGDVNGEKEQKI
FTFLKHSCPHPSEIISQRSKHVSWEPIKVHDIRWNFEKFLVGPDGVPVMRWFHQAPVSTV
KADILAYLKQFKTK
//
>LZPO01108088.1:subseq(16890,136304).[54557:49998].sp
CAGATGAATTGCTACAAAAATGTGAAAGGCACCATCTATGACTACGAGGCTCTCGCTCTT
AACGGGAAGGAACGCATTGAGTTCAAGCGGTATGAAGGCAAGCATGTCCTCTTTGTCAAC
GTGGCTACCTATTGTGGTCTGACAATTCAGTACCCTGAACTGAATGCACTCCAGGAGGAT
TTGAAGCCATCCGGCTTGGTTGTGTTGGGTTTTCCCTGCAACCAGTTTGGAAAGCAAGAA
CCAGGAGAAAATATAGAGATTCTTCCTGGCCTCAAGTATGTTCGTCCAGGAAAAGGATAT
ATACCTAATTTCCAGCTTTTTGCGAAAGGGGATGTAAATGGTGAAAAGGAACAGAAAATC
TTCACCTTCTTGAAGCATTCCTGTCCTCACCCCTCAGAGATTATCTCTCAGAGATCCAAA
CATGTCTCCTGGGAACCAATAAAAGTCCATGACATCCGCTGGAACTTTGAAAAGTTCCTC
GTGGGACCCGATGGAGTCCCTGTCATGCGCTGGTTCCACCAAGCTCCAGTCAGCACTGTC
AAGGCTGATATCCTGGCATACCTGAAGCAATTCAAAACCAAG
//
LZPO01108088.1:subseq(16890,136304)	GeneWise	match	54557	50000	285.00	-	.	LZPO01108088.1:subseq(16890,136304)-genewise-prediction-1
LZPO01108088.1:subseq(16890,136304)	GeneWise	cds	54557	54401	0.00	-	0	LZPO01108088.1:subseq(16890,136304)-genewise-prediction-1
LZPO01108088.1:subseq(16890,136304)	GeneWise	intron	54400	51920	0.00	-	.	LZPO01108088.1:subseq(16890,136304)-genewise-prediction-1
LZPO01108088.1:subseq(16890,136304)	GeneWise	cds	51919	51802	0.00	-	2	LZPO01108088.1:subseq(16890,136304)-genewise-prediction-1
LZPO01108088.1:subseq(16890,136304)	GeneWise	intron	51801	51374	0.00	-	.	LZPO01108088.1:subseq(16890,136304)-genewise-prediction-1
LZPO01108088.1:subseq(16890,136304)	GeneWise	cds	51373	51274	0.00	-	1	LZPO01108088.1:subseq(16890,136304)-genewise-prediction-1
LZPO01108088.1:subseq(16890,136304)	GeneWise	intron	51273	50207	0.00	-	.	LZPO01108088.1:subseq(16890,136304)-genewise-prediction-1
LZPO01108088.1:subseq(16890,136304)	GeneWise	cds	50206	50000	0.00	-	0	LZPO01108088.1:subseq(16890,136304)-genewise-prediction-1
//
