
genewise output
Score 242.82 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
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SPP00000001_2.0   51 NCPVVRLSGQRCNIWEFMQ                          NRPL 
                     +C VVRLSGQ CNIW+F+Q                          NRPL 
                     xCTVVRLSGQECNIWDFIQ          G:G[ggc]        NRPL 
LZPO01034880.1:42004 NtaggcctgcgtaatgtacGGTCAGCA  Intron 1   CAGGCaacc 
                     Ngcttgtcgaagatgatta <1-----[42062:50006]-1>  agct 
                     ccggcccaagacccgtcta                          cgag 


SPP00000001_2.0   75 VLNFGSCTUPSFMFKFDQFKRLIEDFSSIADFLVIYIEEAHAS       
                     VLNFGSCT PSF++KFDQFKRL++DF+S ADFL+IYIEEAHA+       
                     VLNFGSCTXPSFLLKFDQFKRLVDDFASTADFLIIYIEEAHAT       
LZPO01034880.1:50021 gtatgatatcttctatgctaacgggtgtaggtcaatagggcga       
                     ttatgggcgcctttataatagttaatccccattttataacacc       
                     ggttccccatgttgattacgatacctccaacccccccaattga       


SPP00000001_2.0  118                           GWAFKNNMDIRNHQNLQDRLQAA 
                                               GWAFKNN+DIR H++LQDRLQAA 
                               D:D[gat]        GWAFKNNVDIRQHRSLQDRLQAA 
LZPO01034880.1:50150 GGTACAAA  Intron 2   CAGATgtgtaaaggaacccaccgcccgg 
                      <1-----[50151:51795]-1>  ggctaaatatgaaggtaagtacc 
                                               cgtcgccgccggcgccgccggaa 


SPP00000001_2.0  142 HLLLARSPQCPVVVDTMQNQSSQLYAALPERLYIIQEGRILYKV      
                     HLLL RSPQCPVVVDTMQNQSSQLYAALPERLY+I+EGRI YKV      
                     HLLLDRSPQCPVVVDTMQNQSSQLYAALPERLYVIKEGRICYKV      
LZPO01034880.1:51867 ccccgaacctcggggaacacaacctggccgactgaaggaattag      
                     atttaggcagctttactaaaggatacctcagtattaaggtgaat      
                     cgggcgtcgctgggcaggcgccgccatatggctcaggcgcccgg      


//
Making a G in phase 1 intron
Making a D in phase 1 intron
>LZPO01034880.1:subseq(250281,101998).pep
xCTVVRLSGQECNIWDFIQGNRPLVLNFGSCTXPSFLLKFDQFKRLVDDFASTADFLIIY
IEEAHATDGWAFKNNVDIRQHRSLQDRLQAAHLLLDRSPQCPVVVDTMQNQSSQLYAALP
ERLYVIKEGRICYKV
//
>LZPO01034880.1:subseq(250281,101998).[42004:51998].sp
NNCTGCACGGTGGTCCGCCTCTCAGGACAGGAATGCAACATCTGGGATTTCATTCAAGGC
AACAGGCCACTGGTGTTGAATTTTGGCAGCTGCACCTGACCTTCGTTTCTTTTGAAATTT
GATCAATTCAAGAGACTTGTAGACGACTTTGCCTCCACAGCAGACTTCCTCATCATCTAC
ATCGAAGAAGCTCATGCGACAGATGGCTGGGCTTTCAAGAACAACGTGGACATCAGGCAG
CACCGGAGCCTCCAGGACCGCCTGCAGGCAGCACACCTGCTGCTGGACAGGAGTCCCCAG
TGCCCTGTGGTGGTGGACACAATGCAGAACCAGAGCAGCCAGCTCTACGCAGCTCTACCT
GAGAGGCTCTATGTCATAAAGGAGGGCAGGATCTGCTACAAGGTG
//
LZPO01034880.1:subseq(250281,101998)	GeneWise	match	42004	51998	242.82	+	.	LZPO01034880.1:subseq(250281,101998)-genewise-prediction-1
LZPO01034880.1:subseq(250281,101998)	GeneWise	cds	42004	42061	0.00	+	0	LZPO01034880.1:subseq(250281,101998)-genewise-prediction-1
LZPO01034880.1:subseq(250281,101998)	GeneWise	intron	42062	50006	0.00	+	.	LZPO01034880.1:subseq(250281,101998)-genewise-prediction-1
LZPO01034880.1:subseq(250281,101998)	GeneWise	cds	50007	50150	0.00	+	2	LZPO01034880.1:subseq(250281,101998)-genewise-prediction-1
LZPO01034880.1:subseq(250281,101998)	GeneWise	intron	50151	51795	0.00	+	.	LZPO01034880.1:subseq(250281,101998)-genewise-prediction-1
LZPO01034880.1:subseq(250281,101998)	GeneWise	cds	51796	51998	0.00	+	2	LZPO01034880.1:subseq(250281,101998)-genewise-prediction-1
//
