Seblastian output

Selenoprotein id: 1 Category: known selenoprotein

Protein prediction
Predicted by: exonerate Blastx evalue: 1e-32
Query protein: gi|168480083|ref|NP_001091957.2| selenoprotein T2 precursor [Danio rerio] >gi|182636717|sp|Q502K9.3|SELT2_DANRE RecName: Full=Selenoprotein T2; Flags: Precursor
Positions on query: 1-210 Query length: 210

Target name: JARO01004384.1:subseq_28992,60676_
Positions on target: 53765-53863,53646-53728,51163-51273,50941-51067,50005-50092,49147-49265 Strand: -
Has a Redox Box!

  Query   MAEYSQTGILTALLLFTVVTVKDIYVGRNSVTQQ <---Intron---> ENTGPDINTQRQNKHTFYTG
          |||||| ||||||||||||||/|||/|/| //// <    36bp    >   / |  / ||  |   | |
  Target  MAEYSQAGILTALLLFTVVTVRDIYLGKN-MSEE                SLSSPTADAQRTGKARMYMG
          aggtacggacagccctaggagcgatcgaa-aagg                tcatcagggcaagagcatag
          tcaagacgttccttttcttctgatatgaa-tgaa                ctgccccacagcgacgtatg
          gggctggccgaagtccggctggctcgcac-gcgg                cgcggcgcggggcgcggcgc


  Query   PVLKFQYC <---Intron---> ISUGYSKVFQEYSRSISQLYPDIRIEGDNYPPKPINK <---Intr
          |||/||/| <   2372bp   > ||||||||/||||||||||||||||||/||||| ||| <    95b
  Target  PVLRFQFC                ISUGYSKVYQEYSRSISQLYPDIRIEGENYPPKAINK
          cgcctctt                attgtaagtcgttataacctcgacagggatccagaaa
          cttgtatg                tcggagataaaacgctgatacatgtagaaaccactaa
          ggactgc                ttcagccggcggccgtccggcgccatgtgctcaactca
                                    *

  Query   on---> YLGNFLSYFKLLAIALIVTGQNPFQMFGMNTPRIWAWGQENKI <---Intron---> FSCL
          p    > |/ ||/||||||||||||/||||| / ||/|| ||/||||||| <   848bp    > ||||
  Target         YIANFISYFKLLAIALIVSGQNPFPLLGMDTPTIWSWGQENKI                FSCL
                 tagatatttaccgagcagagcactcccgagacaatttgcgaaa                tttt
                 atcattcatattctctttggaactcttgtaccctgcggaaaa                ttcgt
                 ctatttgccaccctcgtctcgccccctagcgaacgagaaatg                atacg


  Query   MAFFISNMLETHFLSTGAFEITLNDI <---Intron---> PIWSKLQSGYVPNIQELFQILDNHLKMN
          | ||/||||||||||||||||||||/ <   739bp    > ||||||||| |||| |||||||||||||
  Target  MVFFLSNMLETHFLSTGAFEITLNDV                PIWSKLQSGRVPNIHELFQILDNHLKMN
          agttcaaacgactctaggtgaacagg                cattacctgcgcaacgctcacgaccaaa
          tttttgattacattccgctatctaa                tctgcatacggtcataattattaaatata
          ggtccctgagcccgtatttatgctt                aatgagggtatatcccgttacttttgggt


  Query   QADKMNFPSP
          | ||//||/|
  Target  QVDKISFPAP
          cggaattcgc
          ataatctccc
          accgcccgtg

SECIS prediction

Predicted by: Infernal (score 26.5)
Covels score: 32.93
Free Energy of structure: -21.0
Target name: JARO01004384.1:subseq_28992,60676_
Positions on target: 48515-48587 Strand: -
Distance between candidate CDS and SECIS: 559
Distance between Sec-UGA and SECIS: 994
SECIS grade: A

SEQ UCCUGUGGCAUAAUGAAGGCCUGCGCUGCAAACAGCUUGCUGUAGGUGCUGGCUGGAUGUCUCUGCCACUCUG
SS ....((((((...{[[[(((({(((((.................)))))}))))]]]}.....))))))....

Output page