Seblastian output

Selenoprotein id: 1 Category: known selenoprotein

Protein prediction
Predicted by: exonerate Blastx evalue: 7e-29
Query protein: gi|929071820|ref|XP_014045606.1| PREDICTED: selenoprotein T1a-like [Salmo salar]
Positions on query: 16-196 Query length: 196

Target name: JARO01003865.1:subseq_1,80962_
Positions on target: 33719-33813,31841-31951,31586-31712,31066-31153,30762-30883 Strand: -
Has a Redox Box!

  Query   LSLYCAASADNSGIKKMKMQFATGPLLKFQIC <---Intron---> ISUGYKRVFEEYMQALYQRYPD
          | | | ||||/ |/|//||||||||||||||| <   1767bp   > /||||/|||||| / | |||||
  Target  LLLACGASADSGGVKRLKMQFATGPLLKFQIC                VSUGYRRVFEEYTRVLNQRYPD
          cccgtggtggagggaccaactgagcccatcat                gttgtccgtggtacgtacctcg
          tttcggcccagggtagtatatccgcttatatg                tcggaggttaaacgttaagaca
          cgggcccgcttccgggcgggcctgctcgcgc                cccaatgggtggcggcgcgtcac
                                                            *

  Query   IRIEGENYLPLPLYR <---Intron---> HVASFLSMFKLALIGLIIIGKDPFALCGMQAPGIWVWGQ
          ||||||||||||/|| <   128bp    > //|||||/|| |/|||||/|||||   ||||||/|||||
  Target  IRIEGENYLPLPVYR                YIASFLSIFKFAVIGLIILGKDPFGFFGMQAPGLWVWGQ
          acagggatccccgtc                tagttctatatggagtaacgagctgttgacgcgctgtgc
          tgtagaaatctctag                atccttcttatcttgttttgaactgttgtaccgtgtgga
          cccaaaccccttccg                tttccgcccgttgtggccgagcatgcttgattccgcgga


  Query   ENKI <---Intron---> YACMMVFFFSNMIENQCMSTGAFEITLNDV <---Intron---> PVWS
          |||| <   432bp    > |||||||| ||||||||||||||||| ||| <   182bp    > ||||
  Target  ENKI                YACMMVFFLSNMIENQCMSTGAFEITFNDV                PVWS
          gaaa                tgtaagttcaaaagactataggtgaatagg                cgtt
          aaa                tacgttttttgattaaagtccgctatctaa                tctgc
          gtg                ccctggtcccccgtgcgcgtatatacattt                gaggc


  Query   KLESGHLPSMQQLVQILENEMKMNVPMDTLPHHRS
          ||/||||||||||||||/||||||| || ||| ||
  Target  KLQSGHLPSMQQLVQILDNEMKMNVHMDALPHQRS
          atctgccctacccgcacgagaaaagcaggccccct
          atacgatcctaattattaaatatatatactcaagc
          gggaccttcggggcgcgctggggcttgttcgcacc

SECIS prediction

Predicted by: Infernal (score 33.01)
Covels score: 34.06
Free Energy of structure: -19.6
Target name: JARO01003865.1:subseq_1,80962_
Positions on target: 30498-30573 Strand: -
Distance between candidate CDS and SECIS: 188
Distance between Sec-UGA and SECIS: 626
SECIS grade: A

SEQ ACGACGACUCCAAUGAAGGUCUGCACUGAAGGCAGGACACUGCAAGUGCAGACUGGAAGUCCCAGUCGGUCGUUCC
SS ..(((((((....([[[((((((((((.................))))))))))]]]).........)))))))..

Output page