Total number of SECIS elements predicted: 1
Number of known selenoproteins predicted: 1
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Selenoprotein id: 1         Category: known selenoprotein
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Protein prediction
Predicted by: exonerate Blastx evalue: 5e-16
Query protein: gi|929517999|ref|XP_005495861.2| PREDICTED: methionine-R-sulfoxide reductase B1 [Zonotrichia albicollis]
Positions on query: 65-105 Query length: 112

Target name: JARO01015170.1:subseq_1,6279_
Positions on target: 658-780 Strand: +


  Query   LKVTCGKCGNGLGHEFLNDGPKRGQSRFUIFSSSLKFVPKG
          |/| ||||||||||||/||||/ ||||||||||||||||||
  Target  LQVLCGKCGNGLGHEFINDGPEEGQSRFUIFSSSLKFVPKG
          ccgctgatgagcgcgtaaggcgggctcttataatcatgcag
          tattggaggagtgaattaagcaagacgtgttggctattcag
          tgtctgatctagctgtatcaagaagtccaatccgggtatat
                                      *            
  

SECIS prediction
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SECIS image
Predicted by: Infernal (score 14.61)
Covels score: 15.64
Free Energy of structure: -23.5
Target name: JARO01015170.1:subseq_1,6279_
Positions on target: 1058-1131 Strand: +
Distance between candidate CDS and SECIS: 277
Distance between Sec-UGA and SECIS: 313
SECIS grade: A

  SEQ  GAGGUGUGGAUGGCUUAUGAAGCGUGUUGGACAAAGCUUCGUUCAGCACACAGAUGUGUCCGUGACCACACCGG
  SS   ..(((((((........{[[{({(((((((((........)))))))))})}]]}..........)))))))..