Seblastian output

Selenoprotein id: 1 Category: known selenoprotein

Protein prediction
Predicted by: exonerate Blastx evalue: 4e-14
Query protein: gi|928047546|ref|XP_013872785.1| PREDICTED: selenoprotein M-like [Austrofundulus limnaeus]
Positions on query: 34-190 Query length: 191

Target name: JARO01003203.1:subseq_20776,66901_
Positions on target: 54711-54815,51634-51669,51315-51349,50000-50078,49488-49706 Strand: -
Has a Redox Box!

  Query   ATMWLVVLV-SLFHFGSAYDVDPNKLEGLARARVE <---Intron---> SCGGUQLNRLRE <---In
          |||||//|/  / |  | |//|| ||| ||/|/|| <   3041bp   > |||||||||||| <   28
  Target  ATMWLLLLLCGVLHSVSGYELDPKKLEALAKAKVE                SCGGUQLNRLRE
          gaatccccctggtctgtgtgcgcaacggcgagagg                atggtccaccag
          cctgtttttggttactcgaatacaatactcacata                gggggatagtga
          gcggcggggcacgcgcgccgtccggggtgcacggg                ccggagccgggg
                                                                 *

  Query   tron---> VKAFVVQDIPLY <---Intron---> HNLVMKHIPGADPELVLLNHYYEELDR <---I
          4bp    > ||||| |||||| <   1236bp   > ||||||||||||||||||/|||||||| <   2
  Target           VKAFVTQDIPLY                HNLVMKHIPGADPELVLLSHYYEELDR
                   gagtgacgacct                cacgaacacgggcgcgccacttggcgc
                   tacttcaatcta                aatttaatcgcacattttgaaaaata
                   cgctgcacctg                cccggggctagtccacccctcccaggt


  Query   ntron---> IALTDMTRSEINELLGKLGFYKKAQEDDEVPEEFRFSPAKDSPFKDEPTSKRSVSDTENT
          93bp    > | |/||/|/||||||  ||||||| /|| |||||/||||||||////   /   | /
  Target            IPLSDMSRAEINELLKSLGFYKKANQDDPVPEEFQFSPAKDSPWEEKREPQTQSSPSPTP
                    acctgaacggaagccatcgttaagacggcgcggtcttcgagactggacgccacttcacac
                   gtctcatggcataattactgtaaacaaaactcaatatcccaagcgaaagacacacccgccc
                   cccgacgtctgccgggggttccggccgccattggcgcgatacccgaagggcgcgttctata


  Query   SSGPEAQVQHTD
           / | /    //
  Target  ETPPTSDTLESE
          gaccatgacgtg
          acccccactaca
          gaacttcagggg

SECIS prediction

Predicted by: Infernal (score 22.45)
Covels score: 21.95
Free Energy of structure: -19.0
Target name: JARO01003203.1:subseq_20776,66901_
Positions on target: 49268-49347 Strand: -
Distance between candidate CDS and SECIS: 140
Distance between Sec-UGA and SECIS: 494
SECIS grade: A

SEQ ACCUGCCAAGUAACCAAAUGACGCCCUGAGCUGCAAAUCAACUGAUUGGCCAGGGACCGAUAAUGCAUGUUUUGGUAGGU
SS ((((((((((........{[[{((((((.((((.............))))))))).)}]]}.........))))))))))

Output page