Seblastian output

Selenoprotein id: 1 Category: known selenoprotein

Protein prediction
Predicted by: exonerate Blastx evalue: 3e-26
Query protein: gi|930749621|ref|XP_014192717.1| PREDICTED: crystallin J1A-like isoform X2 [Haplochromis burtoni] >gi|930749623|ref|XP_014192718.1| PREDICTED: crystallin J1A-like isoform X2 [Haplochromis burtoni] >gi|930749625|ref|XP_014192719.1| PREDICTED: crystallin J1A-like isoform X2 [Haplochromis burtoni] >gi|930749627|ref|XP_014192720.1| PREDICTED: crystallin J1A-like isoform X2 [Haplochromis burtoni] >gi|930749629|ref|XP_014192721.1| PREDICTED: crystallin J1A-like isoform X2 [Haplochromis burtoni]
Positions on query: 1-336 Query length: 342

Target name: JARO01004202.1:subseq_1,64756_
Positions on target: 15937-16003,15293-15469,15010-15108,14663-14755,14212-14368,13783-13898,13324-13401,12843-12982,12236-12316 Strand: -

  Query   MASALANRAMGAITGSAVADAAA <---Intron---> QPLHWVYDLQKLKGILALNPNPEFHPESANP
          ||  |/ | /|/| ||||||||| <   467bp    > |||||/||||||  |||  |/|||||  |||
  Target  MAPVLSERILGSIVGSAVADAAA                QPLHWIYDLQKLNAILAGEPSPEFHPHPANP
          agcgcagaatgaaggtggggggg                cccctatgccacagatgggcacgtccccgac
          tccttgagttggttgcctcacc                cactagtaataatacttcgacgcatacaccac
          gctgctgaaggcctggagatta                cgcctgttcggggctcgaagataatccctact


  Query   FYRRETGKQSCYGDQAYVLLESLSECGG <---Intron---> LNIDDLKQRTLKVFGPGSEYDTPVND
          |||||||/|||||||||||||||||||| <   184bp    > ||/ |||||  | ||| |||||||||
  Target  FYRRETGQQSCYGDQAYVLLESLSECGG                LNVHDLKQRFYKFFGPRSEYDTPVND
          ttcagagccattggcgtgccgtttgtgg                cagcgcaccttattgcatgtgacgag
          taggacgaaggagaacatttactcaggg                tataataagtaattgcgcaaacctaa
          ccaggtggatcttcgatgtggtgtatat                gtgtcaggcccgttcaatgtcttctt


  Query   PYRERGG <---Intron---> PRPQLPIDGPWRHASLKSFLKNVDAGKEETG <---Intron--->
          | |//|  <   254bp    > ||||||| ||||||||||||||/|||/|||| <   294bp    >
  Target  PSRDKGS                PRPQLPISGPWRHASLKSFLKNMDAGREETG
          ctcgaga                caccccaagctacgacaatcaaagggaggag
          ccgaagg                cgcatctggcggacgtagttaatacggaacg
          ttacaat                cacgttttacgatccggccggcgtacagaag


  Query   CENDCQIDGIAKLAPIVAFYAGQPDMLEKVEQAIRVTQNNDECVAETLAAARF <---Intron---> L
          |/ | ||||| ||||/|| |||/|/|||||| | ||||||| ||  ||||||| <   313bp    > |
  Target  CDIDNQIDGITKLAPVVALYAGKPEMLEKVEDATRVTQNNDMCVTVTLAAARF                L
          tgagacaggaaacgcgggctggacgacgaggggacgacaagatgagacgggct                c
          gataaatagtcatccttctacgacattaataaccgtcaaaatgtctctcccg                tt
          tttttgattaaggtagtagctggcgggggggtccaacgcccgtgtcaaatca                ca


  Query   EHFILNGPDPKALDAVLNQLNDPNRKQPQDLDKAVIGH <---Intron---> IHQVKENLSKTPQELI
          ||/|||||||||||/|| |||||/|| ||/||/ |||| <   381bp    > |||||||| |||||||
  Target  EHYILNGPDPKALDSVLEQLNDPSRKNPQELDRTVIGH                IHQVKENLLKTPQELI
          gctacagcgcagcgtgtgccagcaaaaccgcgcagagc                accgagattaaccgca
          aaattagcacactacttaataacggaacaatagcttga                taataaattaccaatt
          atccgttttaaagttaggatttccagtcaagcacctg                ctcagggcgggtggggt


  Query   PSVFTNAUGL <---Intron---> PGAFQAALHGVLTATRYETAVRDTMSCGGCTCSRGSFIGACLGA
          |/||/||||| <   341bp    > |||||||||||||| /// ||/||| ||||||||||||||||||
  Target  PAVFSNAUGL                PGAFQAALHGVLTAHKFDQAVQDTMCCGGCTCSRGSFIGACLGA
          cggttagtgt                cggtcggtcggcagcatgcggcgaattggtataagttaggttgg
          ccttcacggt                cgctacctagttccaataactaactgggggcggggcttgcgtgc
          tttcacaatg                ttccgaagtacgaacgtcgacgccgctgcccttggcctactggt
                 *

  Query   QVG <---Intron---> PEGIPESWKSKTLQYDLVLEHTKKI
          ||| <   526bp    >  /||| ||| |||/|  /||| |||
  Target  QVG                FQGIPSSWKDKTLRYPALLEHAKKI
          cgg                tcgacattagaacatcgtcgcgaaa
          atg                tagtcgcgaaactgaccttaacaat
          gt                acactctcgacaccatttgggtagat

SECIS prediction

Predicted by: Infernal (score 33.44)
Covels score: 28.98
Free Energy of structure: -24.4
Target name: JARO01004202.1:subseq_1,64756_
Positions on target: 12037-12110 Strand: -
Distance between candidate CDS and SECIS: 125
Distance between Sec-UGA and SECIS: 347
SECIS grade: A

SEQ UUCAGCAAAACCUAAAUGAAGGUUCUAGCUUAAAUGUUGUUCAGCUGGAACUUGAUGCUCUGUGUUUUGCUGAA
SS (((((((((((.....{[[(((((((((((............)))))))))))]]}.......)))))))))))

Output page