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Total number of SECIS elements predicted: 1
Number of known selenoproteins predicted: 1
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Selenoprotein id: 1         Category: known selenoprotein
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Protein prediction
Predicted by: exonerate Blastx evalue: 3e-18
Query protein: gi|928063643|ref|XP_013881379.1| PREDICTED: 15 kDa selenoprotein [Austrofundulus limnaeus]
Positions on query: 1-153 Query length: 153

Target name: JARO01014144.1:subseq_1,14120_
Positions on target: 13875-13922,11848-12015,8347-8410,6508-6557,4339-4467 Strand: -


  Query   MSGEVYLLWLFSLLQT <---Intron---> LSAFGADLSSEACRELGFSSNLLCSSCDLLGEFSLTKL
          |/|||||||| |/||  <   1859bp   > /| /||/||||||||||||||||||||||| /|||//|
  Target  MAGEVYLLWLLSILQA                ISTYGAELSSEACRELGFSSNLLCSSCDLLSQFSLSQL
          aggggtcttcctatcg                atatgggcttggtagcgttaacctattgccactactcc
          tcgatattgttcttac                tccagcatccacggatgtcgattggcgattgatgtcat
          gggggcaggcggtagg                ctctatgtcggccgggtcaccttctcccggcgccgtgg
                                                                                
  
  Query   QPNCQQCCQQEAQVEARK <---Intron---> LYGGAILEVCGUKLGRFPQVQA <---Intron---
           | |/||||/|||||||| <   3437bp   >  | ||||||||||||||||||| <   1789bp   
  Target  DPFCRQCCQEEAQVEARK                HYPGAILEVCGUKLGRFPQVQA              
          gcttccttcgggcgggaa                ctcggacggtgtacgatccgcg              
          actggaggaaacatacga                aacgcttatgggatggtcata               
          ccccggccgggcgtacgg                cttttcggctaaagggctaca               
                                                       *                        
  
  Query   > FVRSEKPKMFKGLQIKY <---Intron---> VRGSDPVLKLLDDNGNIAEELSILKWNTDSVEEFL
          > ||||/|||||||||||| <   2040bp   > |||||||||||||||||||||||||||||||||||
  Target    FVRSDKPKMFKGLQIKY                VRGSDPVLKLLDDNGNIAEELSILKWNTDSVEEFL
            tgaagacaatagccaat                gcgtgcgcaccggagaagggcaacataagagggtc
           cttggaacattagtataa                tggcacttattaaagatcaatgttagacagtaatt
           ttcgttgcggcattgcg                ctaccttgcgggtccgcctagccccggcaccgggcg
                                                                                
  
  Query   SEKLDRI
          |||||||
  Target  SEKLDRI
          agacgca
          gaatagt
          taagcca
                 
  
SECIS prediction
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SECIS image
Predicted by: Infernal (score 36.69)
Covels score: 32.54
Free Energy of structure: -23.2
Target name: JARO01014144.1:subseq_1,14120_
Positions on target: 3895-3966 Strand: -
Distance between candidate CDS and SECIS: 372
Distance between Sec-UGA and SECIS: 579
SECIS grade: A

  SEQ  GAAGUGCACAUUAGUGAGGGCCUCACAGUAAACCAGCCCUGGGUUGUGGGGCCUGAUGUCCUUGUGUGCUAA
  SS   ..((((((((....{[[((((((((((((.............))))))))))))]]}.....))))))))..