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Total number of SECIS elements predicted: 1
Number of known selenoproteins predicted: 1
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Selenoprotein id: 1         Category: known selenoprotein
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Protein prediction
Predicted by: exonerate Blastx evalue: 8e-55
Query protein: gi|831192836|gb|AHA36867.2| glutathione peroxidase 1 [Clarias batrachus]
Positions on query: 2-190 Query length: 190

Target name: JARO01004353.1:subseq_1,60318_
Positions on target: 10094-10312,8251-8598 Strand: -


  Query   ATAKSFYDITVKTLSGEELKLSSLQGKVVLVENVASLUGTTVRDYTQMNELHARFSAKGLVILGVPCNQF
           / | ||/// / |/|| |  |/|/|||||/|||||||||| ||||||||||/|// ||||||| |||||
  Target  GSVKKFYELSARLLTGEVLNFSALRGKVVLIENVASLUGTTTRDYTQMNELHSRYAEKGLVILGAPCNQF
          gagaattgctgaccagggcattgcagaggcagaggtctgaaaagtacaagcctctggagcgacggctact
          ggtaataatccgttcgattatcctggattttaatcctggcccgaacataatacgacaagttttgccgaat
          gtgggccgggcggcgaggccctgcgcaggccgtgtgcacgccgcccggcggcgcccgggcgccggcccgc
                                               *                                
  
  Query   GHQ <---Intron---> ENCKNDEILLSLKYVRPGNGFEPKFQLLEKADVNGNDAHPLFVFLKEKLPF
          ||| <   1495bp   > ||||||||| |||||||||||||||||||| /||| |||||||||||||||
  Target  GHQ                ENCKNDEILNSLKYVRPGNGFEPKFQLLEKIEVNGADAHPLFVFLKEKLPF
          gcc                gataaggacatcatgccgagtgcatcccgaaggaggggccttgtcagatct
          gaa                aagaaaattactaatgcgagtacatattaatatagcacactttttaaatct
          ccg                gctgctgcgccggtctgatctgtacataggcagttacacagccctgggaac
                                                                                
  
  Query   PSDEPTALMGDPKCIIWSPVCRNDISWNFEKFLIGPDGIPFKRYSRRYLTSDIEADIKKLLGIAK
          |/|/| /|| ||/ ||||||||||/||||||||||||| ||||||||/|| |||/||/ |||/ |
  Target  PTDDPMSLMNDPRAIIWSPVCRNDVSWNFEKFLIGPDGEPFKRYSRRFLTIDIESDIQSLLGLGK
          caggcatcaagcagaatacgtaaggttatgatcagcgggctactaaattaagagagacaccgcga
          ccaactcttaacgcttggctggaatcgataatttgcagactagagggttctatagatagttgtga
          cttcggccgtcagcccgcagcgtcgcgccggcctctttaatacccagcgccttgtccatttttgg
                                                                           
  
SECIS prediction
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SECIS image
Predicted by: Infernal (score 36.01)
Covels score: 27.39
Free Energy of structure: -17.6
Target name: JARO01004353.1:subseq_1,60318_
Positions on target: 8005-8073 Strand: -
Distance between candidate CDS and SECIS: 177
Distance between Sec-UGA and SECIS: 630
SECIS grade: A

  SEQ  GCUCUUUACUAAAUGAUGGCAUCCUUUAAAACCUUUGUGAAAGGGCUGCCUGAAGAAAAUGUAAAGGUC
  SS   ..(((((((....([[{(((({(((((.............)))))}))))}]])......)))))))..