Results

Selenoproteins



SELENOPROTEINS Family Protein ID tblastn Scaffold Exonerate Gene position t-coffee Alignment SECIs
DI DI1 >SPP00000194_2.0 KN631148.1 KN631311.1 KN637869.1 10201-10545 23511-24524 26908-27264 Sec-Sec position AA 13 Structure 1 Fasta 1 Structure 2 Fasta 2 Structure 3 Fasta 3
DI DI2 >SPP00000195_2.0 KN637869.1 KN631148.1 10735-27339 10177-10602 Sec-Sec (position AA: 134) Sec-Sec (position AA: 21) Structure 1 Fasta 1 Structure 2 Fasta 2
GPx GPx >SPP00000201_2.0 KN618059.1 KN638969.1 KN632563.1 62217-64867 43692-43964 92280-101503 Sec-Sec (position AA: 46) Sec-Cys (position AA: 16) Sec-Cys (position AA: 29) Structure 1 Fasta 1 Structure 3 Fasta 3
GPx GPx2 >SPP00000196_2.0 KN633694.1 46754-52287 Sec-Sec (position AA: 40) Structure Fasta
GPx GPx3 >SPP00000197_2.0 KN638526.1 16865-20932 Sec-Sec (position AA: 45) Structure Fasta
SelP SelP1 >SPP00000217_2.0 KN620947.1 816892-818519 Sec-Sec (position AA: 50) Structure Fasta
SelP SelP2 >SPP00000218_2.0 KN623297.1 96916-99220 (Sec-Sec position AA: 50) Structure Fasta
TR TR >SPP00000228_2.0 KN632363.1 26882-41340 Structure Fasta
TR TR3 >SPP00000229_2.0 KN632363.1 9900-42843 Sec-Sec (position AA: 607) Structure Fasta
Sel15 Sel15 >SPP00000208_2.0 KN622219.1 113416-132255 Sec-Sec (position AA 69) Structure Fasta
SelH SelH >SPP00000210_2.0 KN632251.1 178900-182678 Sec-Sec (position AA: 4) Structure Fasta
SelI SelI >SPP00000210_2.0 KN632251.1 178900-182678 Sec-Sec (position AA: 144) Structure Fasta
SelK SelK >SPP00000209_2.0
SelM SelM >SPP00000213_2.0
SelN SelN >SPP00000214_2.0 KN614981.1 26068-33905 Sec-Sec (position AA: 170) Structure Fasta
SelR1 SelR1 >SPP00000214_2.0 KN635457.1 48530-49734 Sec-Sec (position AA: 75) Structure Fasta
SelS SelS >SPP00000222_2.0
SelT SelT >SPP00000214_2.0 KN635297.1 59408-61861 Sec-Sec (position: AA 7) Structure Fasta
SelU1 SelU1 >SPP00000224_2.0 KN635350.1 170571-180081 Sec-Sec (position AA: 78) Structure Fasta
SPS SPS >SPP00000205_2.0 KN626389.1 80733-90051 Sec-Sec (position: AA 56) Structure








Homologous Cys



HOMOLOGOUS CYS Family Protein ID tblastn Scaffold Exonerate Gene position t-coffee Alignment SECIs
GPx GPx >SPP00000200_2.0 KN632563.1 92175-92441 Sec-Sec (position AA: 11) Structure Fasta
GPx GPx4 >SPP00000198_2.0 KN627758.1 46463-47515 Structure Fasta
GPx GPx8 >SPP00000199_2.0 KN638969.1 43704-43967 Sec-Sec (position AA: 12) Structure 2 Fasta 2
SelR SelR2 >SPP00000220_2.0 KN633105.1 32289-32474 Sec-Sec (position AA: 53) Structure Fasta
SelR SelR3 >SPP00000221_2.0 KN628141.1 8521-67112 Sec-Sec (position AA: 152) Structure Fasta
Sel0 Sel0(1) >SPP00000215_2.0 KN616814.1 126855-127061 Structure Fasta
Sel0 Sel0(2) >SPP00000216_2.0 KN624046.1 121870-139588 Structure Structure
MsrA MsrA >SPP00000202_2.0 KN635239.1 KN635766.1 KN624039.1 KN622922.1 KN636726.1 262551-262700 28143-44919 3393-3569 859115-874692 407-4924 Structure 1 Fasta 1 Structure 2 Fasta 2 Structure 3 Structure 3 Structure 4 Fasta 4 Structure 5 Fasta 5
SelI SelI >SPP00000211_2.0 KN631246.1 74475-82638 Sec-Sec (position AA: 153) Structure Fasta
SelU2 SelU2 >SPP00000225_2.0 KN632497.1 8609-10556 Structure Fasta
SelW SelW >SPP00000227_2.0








Machinery



MACHINERY Family Protein ID tblastn Scaffold Exonerate Gene position t-coffee
eEFsec eEFsec(1) >SPP00000230_2.0 KN617171.1 36097-36741
eEFsec eEFsec(2) >SPP00000231_2.0
eEFsec eEFsec(3) >SPP00000232_2.0 KN617171.1 2901-10232
SBP2 SBP2(1) >SPP00000203_2.0 KN618877.1 581837-599039
SBP2 SBP2 (2) >SPP00000204_2.0 KN632477.1 82268-108573
SecsS SecS >SPP00000207_2.0 KN615039.1 4537-76572
PSTK PSTK >SPP00000233_2.0 KN633361.1 47138-54632
SECp43 SECp43 >SPP00000234_2.0 KN636726.1 201915-211233
SPS1 SPS1 >SPP00000206_2.0 KN636817.1 KN626389.1 39126-51377 80772-88750

In the following links can be find the files with the coordinates of exons and SECIs of the red_proteins and the coordinates of exons and SECIs of the green_proteins.