_______________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 0.0
 Query name: gi|226874933|ref|NP_001152892.1| selenide, water dikinase 2 [Macaca mulatta]
 Query range: 1-451  (total 451)

 Target: /var/www/seblastian_output/415622409/tempfiles/temptarget.fasta
 Chromosome: your_sequence Strand: -
 Positions:
 -Exon 1  45746        47098

 Redox box: no

Query   MAEASATGACGEAMAAVAAAEGSSGPAGLTVGRSFSNYRPFEPQALGLSPSWRLTGFSGMKGUGCKVPQETLLKLLAGLTRPDVRPQLGRGLVGGQEEAS
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Target  MAEASATGACGEAMAAVAAAEGSSGPAGLTVGRSFSNYRPFEPQALGLSPSWRLTGFSGMKGUGCKVPQETLLKLLAGLTRPDVRPQLGRGLVGGQEEAS
        agggtgaggtgggaggggggggttgcggtaggcattatcctgccgtgcacatccagttgaagtgtagccgaccaccggcaccggccccgcgcgggcgggt
        tcaccccgcggactcctcccagccgccgtctgggtcaagctacactgtgcgggtcgtcgtaggggatcaacttattcgtcgcatgcatgggttggaaacc
        ggacgggcccaggggagaagaccgcggcgtgcgccgccgccgcgggcccgcggggccccggcaccgcgggggcacggaggggcggcggcgcggccgaggc
                                                                      *                                     

Query   QEAGMPTGAGSSPTFPALGIGMDSCVIPLRHGGLSLVQTTDFFYPLVEDPYMMGRIACANVLSDLYAMGITECDNMLMLLSVSQSMSEEEREKVTPLMVK
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Target  QEAGMPTGAGSSPTFPALGIGMDSCVIPLRHGGLSLVQTTDFFYPLVEDPYMMGRIACANVLSDLYAMGITECDNMLMLLSVSQSMSEEEREKVTPLMVK
        cgggacagggtacatcgcgagagttgaccacggctcgcaagtttctgggctaagcagtgagcagctgagaagtgaatatcagacaaagggcgagaccaga
        aacgtccgcgcgcctcctgtgtacgttctgaggtcttaccattacttaacattggtcgcattgatactgtcagaatttttgtgagtgaaagaatccttta
        gaccgaaagccccctacgccggctccccggcgcgagggcgcctccggatccgggcattccggtccccggttgtccgggaccccgtgtggacagagacgca
                                                                                                            

Query   GFRDAAEEGGTAVTGGQTVVNPWIIIGGVATVVCQPNEFIMPDSAVVGDVLVLTKPLGTQVAVNAHQWLDNPERWNKVKMVVSREEVELAYQEAMFNMAT
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Target  GFRDAAEEGGTAVTGGQTVVNPWIIIGGVATVVCQPNEFIMPDSAVVGDVLVLTKPLGTQVAVNAHQWLDNPERWNKVKMVVSREEVELAYQEAMFNMAT
        gtcgggggggaggaggcaggactaaaggggaggtccagtaacgaggggggcgtaactgacgggagcctcgacgataagaaggtaggggcgtcggataaga
        gtgaccaaggcctcggacttacgtttggtccttgacaatttcagcttgattttcactgcatctacaagtaacaggaatatttcgaatatcaaacttatcc
        ctgtcagaagaagctgaggcctgtactatctgacgatgcaggctcctgcgggacaaaacgttctccaggtttaagtaagggccaaggggctgacgctgtc
                                                                                                            

Query   LNRTAAGLMHTFNAHAATDITGFGILGHSQNLAKQQRNEVSFVIHNLPVIAKMAAVSKASGRFGLLQGTSAETSGGLLICLPREQAARFCSEIKSSKYGE
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Target  LNRTAAGLMHTFNAHAATDITGFGILGHSQNLAKQQRNEVSFVIHNLPVIAKMAAVSKASGRFGLLQGTSAETSGGLLICLPREQAARFCSEIKSSKYGE
        caaagggtacatagcggagaagtgacgctcacgaccaaggttgacaccgagaagggaagagctgcccgatggatggtcatccagcggctttgaattatgg
        tagcccgttactacacccatcgtgttgacaatcaaagaatctttaatcttcatcctgacgggtgttagcccaccggtttgtcgaaccgtgcataccaaga
        ccattatagcattctgcatcactctgaccgctaaaaatagctttttggatcggtcccgctagtgttaacatactgaagttgaaaggtcttcacaccgcag
                                                                                                            

Query   GHQAWIVGIVEKGNRTARIIDKPRVIEVLPRGATAAALAPDSSNASSEPSS
        |||||||||||||||||||||||||||||||||||||||||||||||||||
Target  GHQAWIVGIVEKGNRTARIIDKPRVIEVLPRGATAAALAPDSSNASSEPSS
        gccgtaggaggagacagcaagaccgaggcccggagggcgcgatagttgcat
        gaacgttgttaagagccgttaacgttattcggccccctccagcacccacgc
        tcaggctctgagacagcgttcggattacattgcattttttctatcctgtcg
                                                           
 Sequence until next stop: 
TGA
 * 

 Distance CDS-SECIS: 567 ; UGA-SECIS: 1731

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = your_sequence Strand = - Positions = 45178 - 45102
 Found by:  Infernal (score=29.81) Covels (score=20.9)
 Stem2 length = 9   Apical loop length = 19   Insertion in stem2 = 1, 0
 Free Energy = -18.6

         ..(((((((.......((((((((((.(((((...............)))))))))))))))..........)))))))..
 model   uucggucaugcgUuaAUGAcGgccug-gcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuu-u-uuucaugaccggc
         (((({(((((--....([[{(((((((.((...................)))))))))}]])......-.-)))))}))))
 target  UUGGUCUCUG--UUAAUGACGUCUCUCCCUCUAAACUCCAUUAAGGACUGGGAGAGGCAGAGCAAGCC-U-CAGAGCCCAG
                         ****            ^^^                       ****