_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 1e-10
 Query name: gi|315360675|ref|NP_001186770.1| ethanolaminephosphotransferase 1 [Oryctolagus cuniculus]
 Query range: 1-397  (total 397)

 Target: /data/www-rg/seblastian_results/254176532/tempfiles/temptarget.fasta
 Chromosome: KQ009260.1:subseq_6230464,100074_ Strand: -
 Positions:
 -Exon 1  68469        68525
 -Exon 2  50003        50071
 -Exon 3  49461        49569
 -Exon 4  47174        47248
 -Exon 5  41262        41524
 -Exon 6  39539        39647
 -Exon 7  30904        30952
 -Exon 8  29091        29271
 -Exon 9  27698        27880
 -Exon 10 25124        25219

 Redox box: no

Query   MAGYEYVSPEQLAGFDKYK <---Intron---> YSAVDTNPLSLYIMHPFWNTVVK <---Intron---> VFPTWLAPNLITFSGFLLVVFNFLLM
        ||||||||||||||||||| <  18397bp   > ||||||||||||/|||||||/|| <   433bp    > ||||||||||||||||||||||||||
Target  MAGYEYVSPEQLAGFDKYK                YSAVDTNPLSLYVMHPFWNTIVK                VFPTWLAPNLITFSGFLLVVFNFLLM
        aggtgtgacgccggtgata                tagggaacctctgaccttaaaga                gtcatcgcacaattgtccggtatcca
        tcgaaatgcaatcgtaaaa                agctacactctattactgactta                ttccgtccattctcgttttttatttt
        gtccacgcggggtcttgcg                cttgtctattgtcgtatgctaag                atttgggctgatttctggtacttaag
                                                                                                            

Query   AYFDPDFYASA <---Intron---> PGHKHVPDWVWIVVGILNFIAYTLD <---Intron---> GVDGKQARRTNSSTPLGELFDHGLDSWSCVYF
        ||||||||||| <   2212bp   > |||||||||||||||||||/||||| <   5649bp   > ||||||||||||||||||||||||||||||||
Target  AYFDPDFYASA                PGHKHVPDWVWIVVGILNFVAYTLD                GVDGKQARRTNSSTPLGELFDHGLDSWSCVYF
        gttgcgttgtg                cgcacgcgtgtagggacatggtacg                ggggacgcaaataactggctgcgcgatttgtt
        catacatacc                ccgaaatcagtgtttgttattcact                agtagaacggcacgcctgattaagtaggcgtat
        actttcctca                aatcgtgtcgtgtagcccccaccta                ttgcagatcacttctcaggttttcgttgattct
                                                                                                            

Query   VVTVYSIFGRGPTGVSVFVLYLLLWVVLFSFILSHWEKYNTGILFLPWGYDISQV <---Intron---> TISFVYIVTAVVGVEAWYEPFLFNFLYRD
        ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| <   1614bp   > |||||||||||||||||||||||||||||
Target  VVTVYSIFGRGSTGVSVFVLYLLLWVVLFSFILSHWEKYNTGILFLPWGYDISQV                TISFVYIVTAVVGVEAWYEPFLFNFLYRD
        ggagttatgagtaggagtgctccctggttttactctgataagactcctgtgaacg                aattgtagagggggggttgctctatttag
        ttctacttgggccgtgttttatttgttttctttcagaaaacgttttcggaatgat                ctcttattccttgtacgaactttattaga
        tatttcctaaagttcttttttcgagatgttccgccgagtcagttcgagatctcgg                ttttccagtgtgatgcgtatcgttcatac
                                                                                                            

Query   LFTAMIIG <---Intron---> CALCVTLPMSLLNFFR <---Intron---> SYKNNTLKHNSVYEAMVPFFSPCLLFILSTAWILRSPSDILELH
        |||/|||| <   8586bp   > |||||||||||||||| <   1632bp   > |||||||||||||||/|| ||||||||||||||| |||||||||
Target  LFTSMIIG                CALCVTLPMSLLNFFR                SYKNNTLKHNSVYEAVVPLFSPCLLFILSTAWILWSPSDILELH
        ctataaag                tgttgaccaatcatta                ataaaatacatgtggggctttcttctattagtacttctgatgcc
        ttccttt                ggctgtctctgttattg                gaaaactaaactaacttcttccgtttttcccgttgcccattata
        actagtt                ttggtgttagtaactc                actatccgactactatgtcattacggctgtaggctgatattagat
                                                                                                            

Query   PRIFYFMVGTAFANIT <---Intron---> CQLIVCQMSSTRCPTLNWLLVPLFVVVMAVNLGVASYVESILLYALTAAFTLAHIHYGVRV <---In
        ||/||||||||||| | <   1210bp   > ||||||||||||||||||||||||/||/ ||||||||||||||| || ||||||||||||| <   24
Target  PRVFYFMVGTAFANST                CQLIVCQMSSTRCPTLNWLLVPLFLVVLVVNLGVASYVESILLYTLTTAFTLAHIHYGVRV       
        cagtttaggagtgaaa                tccagtcaaaactcatattcgccttggtggacgggttggaacctataagtacgcactggcg       
        cgttatttgcctcagc                gatttgatggcggcctagtttcttttttttatgtccatagtttactccctctcataagtgt       
        taacctgtaactccca                tggttcagttcgtatgtgggttccgtcagacaaactctgctcgtaaagtttgcccttaaag       
                                                                                                            

Query   tron---> VKQLSSHFQIYPFSLRKPNSDULGMEEKNIAL
        78bp   > |||||||||||||||||||||||||||||| |
Target           VKQLSSHFQIYPFSLRKPNSDULGMEEKNIGL
                 gaccaactcatctttaacatgtcgaggaaagc
                 taatggatatactctgacacagtgtaaaatgt
                 agggccttgtcccaggaacataaagaagttcg
                                      *          
 Sequence until next stop: 
TAA
 * 

 Distance CDS-SECIS: 1299 ; UGA-SECIS: 1329

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = KQ009260.1:subseq_6230464,100074_ Strand = - Positions = 23824 - 23746
 Found by:  Infernal (score=27.74) Covels (score=21.25)
 Stem2 length = 10   Apical loop length = 19   Insertion in stem2 = 0, 0
 Free Energy = -6.11

         ..(((((((.......(((((((((((((((...................)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcC----cuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         ...(({({((......{[[[((((((({(((...................)))})))))))]]]}..--..-))})}))...
 target  GAAGUUUGUGCUUGAAUGAAGAGUGUAUCUUAAACCUCCUUUUUUUGGACAGGCUGCACUUGGAUAA--CA-UAGGCACCAC
                         ****           ^^^                           ****