_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:QUE_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
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 Blastx evalue: 6e-27
 Query name: gi|820984013|ref|XP_012352468.1| PREDICTED: selenoprotein H [Nomascus leucogenys] >gi|820984019|ref|XP_012352471.1| PREDICTED: selenoprotein H [Nomascus leucogenys]
 Query range: 1-122  (total 122)

 Target: /data/www-rg/seblastian_results/296890112/tempfiles/temptarget.fasta
 Chromosome: KQ005813.1:subseq_812415,100101_ Strand: +
 Positions:
 -Exon 1  49483        49604
 -Exon 2  49694        49839
 -Exon 3  50004        50101

 Redox box: YES

Query   MAPRGRKRKAEAAVVAVAEKREKLANSGEGMEEATVVIEHC <---Intron---> TSURVYGRNAAALSQALRLEAPELPVKVNPTKPRRGSFEVTLL
        |||||||||||||/|| |||/|||||||||||||||||||| <    89bp    > |||||||||||||||||||||||||||||||||||||||||||
Target  MAPRGRKRKAEAAMVAAAEKQEKLANSGEGMEEATVVIEHC                TSURVYGRNAAALSQALRLEAPELPVKVNPTKPRRGSFEVTLL
        agccgaacaggggagggggacgacgaagggagggaggagct                aatcgtgcagggcacgcccggcgccgagacaaccagatggacc
        tccgggagacaccttcccaaaaatcaggagtaacctttaag                cgggtaggaccctgactgtaccatctataccacggggtatctt
        gtcctggggtgcggccacggaggggccggagggacttcgt                cgcacctgcccgcgtgggcggcagtaaggcgcgcggcccggggg
                                                                   *                                        

Query   RPDGSS <---Intron---> AELWTGIKKGPPRKLKFPEPQEVVEELKKYLS
        |||||| <   164bp    > ||||||||||||||||||||||||||||||||
Target  RPDGSS                AELWTGIKKGPPRKLKFPEPQEVVEELKKYLS
        ccggaa                ggctagaaagcccacatcgccgggggtaatct
        gcagg                gcatgcgtaagccgatatcacaattaataaatc
        cgccc                tggcgtgtgggcacacactgtagggaggggcgg
                                                              
 Sequence until next stop: 
TAG
 * 

 Distance CDS-SECIS: 665 ; UGA-SECIS: 899

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = KQ005813.1:subseq_812415,100101_ Strand = + Positions = 50767 - 50834
 Found by:  Infernal (score=27.8) Covels (score=26.97)
 Stem2 length = 10   Apical loop length = 9   Insertion in stem2 = 0, 0
 Free Energy = -11.92

         ..(((((((.......(((((((((((((((...............)))))))))))))))..........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuu-u-uuucaugaccggc
         ...(((({(---....([[{(([(((((((......--------...)))))))]))}]])......-...)}))))...
 target  GUUGGAACA---UUAAUGAUGGAACAUGGCCAAACU--------UCAGUCAUGUGCCUGAAGCCAUG-GUUUCUUCCCCG
                         ****           ^^^                       ****