_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:QUE_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 3e-37
 Query name: gi|226817308|ref|NP_001152830.1| glutathione peroxidase precursor [Macaca mulatta]
 Query range: 1-221  (total 221)

 Target: /var/www/seblastian_output/161858845/tempfiles/temptarget.fasta
 Chromosome: your_sequence Strand: +
 Positions:
 -Exon 1  50000        50086
 -Exon 2  53515        53668
 -Exon 3  57908        58025
 -Exon 4  58521        58620
 -Exon 5  59829        60032

 Redox box: no

Query   MIRQFQACCLVLLFLVGFAQQTLKPQNRK <---Intron---> VDCNKRVTGTIYEYGALTLNSEEYIQFKQFAGKHVLFVNVATYUGLAAQYPE <-
        ||||||||||||||||||||||||||||| <   3428bp   > ||||| |||||||||||||| ||||||||||||||||||||||||||||||| < 
Target  MIRQFQACCLVLLFLVGFAQQTLKPQNRK                VDCNKGVTGTIYEYGALTLNGEEYIQFKQFAGKHVLFVNVATYUGLAAQYPE   
        aacctcgttcgcctcggtgccacaccaaa                ggtaaggagaatgtggcacagggtactactggacgctgaggattgtggctcg   
        ttgatacggtttttttgtcaactacaaga                tagaagtcgctaaagctctagaaatataatcgaattttatccaggtccaac    
        gcggtgccttcggcgtcttggcagtatgg                gtccaagaccctgtaccccctggccgcggtacgccgtctacctacgatgtt    
                                                                                                *           

Query   --Intron---> LNALQEELKNFGVVVLAFPCNQFGKQEPGTNSEILLGLKY <---Intron---> VRPGSGFVPNFQLFEKGDVNGEKEQKVFTFL
          4239bp   > |||||||||||||||||||||||||||||||||||||||| <   495bp    > |||||||||||||||||||||||||||||||
Target               LNALQEELKNFGVVVLAFPCNQFGKQEPGTNSEILLGLKY                VRPGSGFVPNFQLFEKGDVNGEKEQKVFTFL
                     cagccggcaatggggtgtctactgacgcgaatgaccgcat                gccgagtgcatcctgagggaggagcagtatc
                    atactaaataatgttttctcgaatgaaacgcacatttgta                atgcgggttcatattaagatagaaaaattctt
                    agtaagggggtttctggctcccgtaaaaaaacaaattacg                tgtattctcttcgctgagtgtaaaaggcttcg
                                                                                                            

Query   KNS <---Intron---> CPPTSDLLGSSSQLFWEPMKVHDIRWNFEKFLVGPDGVPVMRWFHRAPVSTVKSDILEYLKQFNAH
        ||| <   1208bp   > ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Target  KNS                CPPTSDLLGSSSQLFWEPMKVHDIRWNFEKFLVGPDGVPVMRWFHRAPVSTVKSDILEYLKQFNAH
        aat                tccatgctgttaccttgcaagcgactatgatcggcgggcgacttccgcgaagatgacgtcactagc
        aa                cgccccattgccgattgactataatggataatttgcagtcttggtagcctgctacattaataataca
        gc                cctactttgcaacgccgacgactcccgctgataggctactcgcgccgtaccacaaccggcaggctcc
                                                                                             
 Sequence until next stop: 
TAG
 * 

 Distance CDS-SECIS: 613 ; UGA-SECIS: 1057

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = your_sequence Strand = + Positions = 60646 - 60721
 Found by:  Infernal (score=27.56) Covels (score=23.45)
 Stem2 length = 8   Apical loop length = 16   Insertion in stem2 = 0, 0
 Free Energy = -20.2

         ..(((((((.......(((((((((((((((...............)))))))))))))))..........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuu-u-uuucaugaccggc
         (({(((((((--....([[{(((((({{((......-..........))}}))))))}]])......-..)))))))}))
 target  GAGGGGCAUC--UCCAUGACGGUGGGUCCCAAAACC-UCUCGGGGUCGGACCCUGCCAGAGCCUUCC-UUGGUGCCUGUC
                         ****          ^^^                        ****