_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 9e-19
 Query name: gi|6649223|gb|AAF21431.1|AF166126_1 selenoprotein Zf1 [Homo sapiens]
 Query range: 1-277  (total 277)

 Target: /data/www-rg/seblastian_results/814176807/tempfiles/temptarget.fasta
 Chromosome: KN983425.1:subseq_138605,119148_ Strand: +
 Positions:
 -Exon 1  50057        50089
 -Exon 2  52503        52677
 -Exon 3  65544        65680
 -Exon 4  68608        68703
 -Exon 5  69053        69145
 -Exon 6  70840        70911
 -Exon 7  71090        71187
 -Exon 8  72052        72178

 Redox box: no

Query   MRSIPLRGFDQ <---Intron---> QMSSMVIEHMASHGTRFLRGCAPSRVRRLPDGQLQVTWEDSTTGKEDTGTFDTVLWAIG <---Intron---
        /|||||||||| <   2413bp   > |||||||||| ||||/|||||||||| ||||| ||||||| |||||||||||||||||| <  12866bp   
Target  IRSIPLRGFDQ                QMSSMVIEHMESHGTQFLRGCAPSRVSRLPDGHLQVTWEDRTTGKEDTGTFDTVLWAIG              
        acaacccgtgc                cattagagcagtcgactcagtgctcgaaccggcccgatggcaagaggagatgagctgag              
        tggtctggtaa                atcctttaatacagcattgggcccgtggtcagatatcgaagccgaaacgctacttgct               
        acccccccccg                agctgcagcgattccgcggctcccactgcttccggccggccctcggcaccccccggca               
                                                                                                            

Query   > RVPDTRSLNLEKAGVDTSPDTQKILVDSREATSVPHIYAIGDVVE <---Intron---> GRPELTPTAIMAGRLLVQRLFGGSSDLMDYDN <---
        > |||||||||||||||||||||||||||||| |||||||||||||| <   2927bp   > |||||||||||||||||||||||||||||||| <   
Target    RVPDTRSLNLEKAGVDTSPDTQKILVDSREGTSVPHIYAIGDVVE                GRPELTPTAIMAGRLLVQRLFGGSSDLMDYDN     
          cgcgaaacatgaggggaacgacaacggtcggatgccatgaggggg                gccgcacagaaggaccgccctggttgcagtga     
         ggtcacggtataacgtacgcacaatttacgagcctcatactgatta                ggcatccccttcggtttagttggccattaaaa     
         taaaccatgtaggtgattccctggcggccgacctgcccccttcggg                ggtggacgtcgtggcggggcctgcacggctcc     
                                                                                                            

Query   Intron---> VPTTVFTPLEYGCVGLSEEEAVARHGQEHVE <---Intron---> VYHAHYKPLEFTVAGRDASQCYVK <---Intron---> MV
        349bp    > ||||||||||||||||||||||||||||||| <   1694bp   > |||||||||||||||||||||||| <   178bp    > ||
Target             VPTTVFTPLEYGCVGLSEEEAVARHGQEHVE                VYHAHYKPLEFTVAGRDASQCYVK                MV
                   gcaagtaccgtgtggctggggggccgcgcgg                gtcgctaccgtagggcggtcttga                ag
                   tcccttcctaaggtgtcaaactcgagaaata                taacaaactatctcggaccagata                tt
                   tcgcccccggtctgggcgggagtccgggttg                cttcttagggcggtagtacgttag                gg
                                                                                                            

Query   CLREPPQLVLGLHFLGPNAGEVTQGFALGIK <---Intron---> CGASYAQVMRTVGIHPTCSEEVVKLRISKRSGLDPTVTGCUG
        ||||||||||||||||||||||||||||||| <   864bp    > ||||| ||||||||||||||||||||||||||||||||||||
Target  CLREPPQLVLGLHFLGPNAGEVTQGFALGIK                CGASYEQVMRTVGIHPTCSEEVVKLRISKRSGLDPTVTGCUG
        tcagccccgcgcctcgcaggggacgtgcgaa                tggttgcgacaggaccattggggaccatactgcgcagagttg
        gtgaccatttgtattgcacgatcagtctgta                ggccaaattgctgtaccgcaattatgtcagcgtacctcgggg
        cgggcgggggcgcctcccacattaattggc                gtgtccgggggcgtctcaccggacggcccgcacgccggaccag
                                                                                               * 
 Sequence until next stop: 
TAA
 * 

 Distance CDS-SECIS: 1462 ; UGA-SECIS: 1465

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = KN983425.1:subseq_138605,119148_ Strand = + Positions = 73641 - 73711
 Found by:  Infernal (score=29.09) Covels (score=29.93)
 Stem2 length = 8   Apical loop length = 17   Insertion in stem2 = 0, 0
 Free Energy = -16.23

         ..(((((((.......(((((((((((((((...............)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         .({((((((---....([[{((({((({((.................))})))})))}]])----....))))))}).
 target  UGCUGCCAG---AUGAUGACGACCUGGAUGGAAACCCACCCUGUGGGCACCCAUGUCCGAG----CCCCCUGGCAUUU
                         ****           ^^^                       ****