_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 4e-24
 Query name: gi|821102030|ref|XP_012375807.1| PREDICTED: selenoprotein M, partial [Dasypus novemcinctus]
 Query range: 13-125  (total 125)

 Target: /data/www-rg/seblastian_results/729068402/tempfiles/temptarget.fasta
 Chromosome: KN980174.1:subseq_1325349,100312_ Strand: +
 Positions:
 -Exon 1  49333        49401
 -Exon 2  49622        49656
 -Exon 3  49999        50077
 -Exon 4  50157        50312

 Redox box: YES

Query   APDLLHFVPLQTCGGUQLNRLKE <---Intron---> VKAFVTQDIPFY <---Intron---> HNLVMKHLPGADPELVLLDHRYEELE <---In
         ||| ||/||||||||||||||| <   220bp    > |||||||||||| <   342bp    > ||||||||||||||||||  |||||| <    7
Target  TPDLSHFIPLQTCGGUQLNRLKE                VKAFVTQDIPFY                HNLVMKHLPGADPELVLLGRRYEELE       
        acgctctacccatggtccaccag                gagtgacgactt                cacgaacccgggcgcgccgcctggcg       
        ccatcattctacggggatagtaa                tacttcaatcta                aatttaatcgcacattttgggaaata       
        ttcacttcccgctgaaggccagg                ggtcccgctac                tccgggacctgcctgcgggccccgagg       
                       *                                                                                    

Query   tron---> RIPLSDMTREEINALVQELGFYRKAAPDAPVPPEYLRAPARPAEGDPDRADL
        9bp    > |||||/||||||||||||||||||||||| |||||/ ||||| |   | |||
Target           RIPLSEMTREEINALVQELGFYRKAAPDAQVPPEYVWAPARPPEETSDHADL
                 caccagaacggaagcgcgcgttcaggcggcgccgtgtgcgaccggatgcggc
                 gtctgatcgaatacttaatgtagacccacatccaatgcccgccaaccaacat
                 cagctagccagccgggggcccccgggccgggccgcgggctgcggatgcctcg
                                                                     
 Sequence until next stop: 
TAG
 * 

 Distance CDS-SECIS: 42 ; UGA-SECIS: 333

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = KN980174.1:subseq_1325349,100312_ Strand = + Positions = 50355 - 50429
 Found by:  Infernal (score=17.49) Covels (score=19.77)
 Stem2 length = 9   Apical loop length = 18   Insertion in stem2 = 0, 0
 Free Energy = -24.07

         ..(((((((.......(((((((((((((((................)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcC-cuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         .((((({(((--....{[[{(({(((((((..................)))))))}))}]]}..--...)))}))))).
 target  UCCUGGAGAC--AGAAUGAAGCGCUCAGCAUCCCGGGAAUACCUCUCUUGCUGAGGGCCGAUGC--CCCGUCCCCGGGC
                         ****           ^^                         ****