genewise output
Score 245.49 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
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SPP00000078_2.0    1 MSLLLPPLALLLLLAALVAPATAATAYRPDWNRLSGLTRARVE       
                     MSLLLPPLALLLLLAALV PATAATAYRPDWNRLSGLTRARVE       
                     MSLLLPPLALLLLLAALVDPATAATAYRPDWNRLSGLTRARVE       
KN980174.1:subs47833 aacctcccgcccccggcggcgaggagtccgtaccagcacgcgg       
                     tgtttcctctttttccttacccccccagcagagtggtcgcgta       
                     gccggtggggggtcggtacacacctccggcgttgccgcccgag       


SPP00000078_2.0   44                        TCGGUQLNRLKE               
                                            TCGG QLNRLKE               
                                            TCGGXQLNRLKE               
KN980174.1:subs47962 GTGAGTA  Intron 1   CAGatggtccaccag               
                     <0-----[47962:49365]-0>cggggatagtaa               
                                            ctgaaggccagg               


SPP00000078_2.0   56                        VKAFVTQDIPF                
                                            VKAFVTQDIPF                
                                            VKAFVTQDIPF                
KN980174.1:subs49402 GTGAGTT  Intron 2   CAGgagtgacgact                
                     <0-----[49402:49621]-0>tacttcaatct                
                                            ggtcccgctac                


SPP00000078_2.0   67                           HNLVMKHLPGADPELVLLGRRYE 
                                               HNLVMKHLPGADPELVLLGRRYE 
                                Y:Y[tat]       HNLVMKHLPGADPELVLLGRRYE 
KN980174.1:subs49655 TAGTATCCT  Intron 3   CAGTcacgaacccgggcgcgccgcctg 
                       <2-----[49657:49998]-2> aatttaatcgcacattttgggaa 
                                               ccgggacctgcctgcgggccccg 


SPP00000078_2.0   91 ELE                       RIPLSEMTREEINALVQELGFYR 
                     ELE                       RIPLSEMTREEINALVQELGFYR 
                     ELE                       RIPLSEMTREEINALVQELGFYR 
KN980174.1:subs50069 gcgGTGAGGC  Intron 4   CAGcaccagaacggaagcgcgcgttc 
                     ata<0-----[50078:50156]-0>gtctgatcgaatacttaatgtag 
                     agg                       cagctagccagccgggggccccc 


SPP00000078_2.0  117 KAAPDAQVPPEYVWAPAKPPEETSDHADL                     
                     KAAPDAQVPPEYVWAPA+PPEETSDHADL                     
                     KAAPDAQVPPEYVWAPARPPEETSDHADL                     
KN980174.1:subs50226 aggcggcgccgtgtgcgaccggatgcggc                     
                     acccacatccaatgcccgccaaccaacat                     
                     gggccgggccgcgggctgcggatgcctcg                     


//
Making a Y in phase 2 intron
>KN980174.1:subseq(1325349,100312).pep
MSLLLPPLALLLLLAALVDPATAATAYRPDWNRLSGLTRARVETCGGXQLNRLKEVKAFV
TQDIPFYHNLVMKHLPGADPELVLLGRRYEELERIPLSEMTREEINALVQELGFYRKAAP
DAQVPPEYVWAPARPPEETSDHADL
//
>KN980174.1:subseq(1325349,100312).[47833:50312].sp
ATGAGCCTCCTGTTGCCTCCGCTGGCGCTGCTGCTGCTTCTCGCGGCGCTTGTAGACCCA
GCCACAGCCGCCACTGCCTACCGGCCGGACTGGAATCGTCTGAGCGGCCTGACCCGCGCC
CGGGTAGAGACCTGTGGGGGATGACAGCTGAACCGCCTAAAGGAGGTGAAGGCTTTCGTC
ACCCAGGACATTCCATTCTATCACAACCTGGTGATGAAACACCTCCCTGGGGCCGACCCT
GAGCTCGTGCTGCTGGGCCGCCGCTACGAGGAACTGGAGCGCATACCGCTCAGTGAAATG
ACCCGCGAAGAGATCAACGCGCTGGTGCAGGAGCTCGGCTTCTACCGCAAGGCGGCGCCC
GACGCGCAGGTGCCCCCCGAGTACGTGTGGGCGCCCGCTAGGCCCCCGGAGGAAACTTCG
GACCACGCTGACCTG
//
KN980174.1:subseq(1325349,100312)	GeneWise	match	47833	50312	245.49	+	.	KN980174.1:subseq(1325349,100312)-genewise-prediction-1
KN980174.1:subseq(1325349,100312)	GeneWise	cds	47833	47961	0.00	+	0	KN980174.1:subseq(1325349,100312)-genewise-prediction-1
KN980174.1:subseq(1325349,100312)	GeneWise	intron	47962	49365	0.00	+	.	KN980174.1:subseq(1325349,100312)-genewise-prediction-1
KN980174.1:subseq(1325349,100312)	GeneWise	cds	49366	49401	0.00	+	0	KN980174.1:subseq(1325349,100312)-genewise-prediction-1
KN980174.1:subseq(1325349,100312)	GeneWise	intron	49402	49621	0.00	+	.	KN980174.1:subseq(1325349,100312)-genewise-prediction-1
KN980174.1:subseq(1325349,100312)	GeneWise	cds	49622	49656	0.00	+	0	KN980174.1:subseq(1325349,100312)-genewise-prediction-1
KN980174.1:subseq(1325349,100312)	GeneWise	intron	49657	49998	0.00	+	.	KN980174.1:subseq(1325349,100312)-genewise-prediction-1
KN980174.1:subseq(1325349,100312)	GeneWise	cds	49999	50077	0.00	+	1	KN980174.1:subseq(1325349,100312)-genewise-prediction-1
KN980174.1:subseq(1325349,100312)	GeneWise	intron	50078	50156	0.00	+	.	KN980174.1:subseq(1325349,100312)-genewise-prediction-1
KN980174.1:subseq(1325349,100312)	GeneWise	cds	50157	50312	0.00	+	0	KN980174.1:subseq(1325349,100312)-genewise-prediction-1
//