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_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
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 Blastx evalue: 3e-56
 Query name: gi|820984013|ref|XP_012352468.1| PREDICTED: selenoprotein H [Nomascus leucogenys] >gi|820984019|ref|XP_012352471.1| PREDICTED: selenoprotein H [Nomascus leucogenys]
 Query range: 1-122  (total 122)

 Target: /data/www-rg/seblastian_results/318926143/tempfiles/temptarget.fasta
 Chromosome: KN983522.1:subseq_11772271,100365_ Strand: +
 Positions:
 -Exon 1  50000        50365

 Redox box: YES

Query   MAPRGRKRKAEAAVVAVAEKREKLANSGEGMEEATVVIEHCTSURVYGRNAAALSQALRLEAPELPVKVNPTKPRRGSFEVTLLRPDGSSAELWTGIKKG
        |||| ||||||||/|| ||||||||||||||||||||/|||||| |||||| |||||||||||||||||||||| /||||||||||||||||||||||||
Target  MAPRSRKRKAEAAIVAAAEKREKLANSGEGMEEATVVMEHCTSUGVYGRNATALSQALRLEAPELPVKVNPTKPWKGSFEVTLLRPDGSSAELWTGIKKG
        agccaaacaggggagggggacgacgaagggagggaggagctaatggtgcagagcacgcccggcgccgagacaactagatggaccccggaaggctagaaag
        tccgggagacaccttcccaagaatcaggagtaacctttaagcgggtaggaccctgactgtaccatctataccacgaggtatcttgcagggcatgcgtaag
        gtcctggggtgcgatcatggaggggccggagggatttggtcgcacctgcccgcgtgggcgggagtaaggcgcgcggcccgggggcgccctggcgtgtggg
                                                   *                                                        

Query   PPRKLKFPEPQEVVEELKKYLS
        ||||||||||||||||||||||
Target  PPRKLKFPEPQEVVEELKKYLS
        cccacatcgccgggggtaatct
        ccgatatcacaattaataaatc
        cacacactgtagggaggggcgc
                              
 Sequence until next stop: 
TAG
 * 

 Distance CDS-SECIS: 51 ; UGA-SECIS: 285

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = KN983522.1:subseq_11772271,100365_ Strand = + Positions = 50417 - 50484
 Found by:  Infernal (score=22.87) Covels (score=23.87)
 Stem2 length = 9   Apical loop length = 9   Insertion in stem2 = 0, 0
 Free Energy = -10.02

         ..(((((((.......(((((((((((((((...............)))))))))))))))..........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuu-u-uuucaugaccggc
         ...(((({(---....([[{{([(((((((......--------...)))))))])}}]])......-...)}))))...
 target  GUUGGAACA---UUAAUGAUAGAACACGGCCAAACU--------UCAGUCGUGUGCCUGAAGCCGUG-GUUUCUUCCCCG
                         ****           ^^^                       ****